STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
YxeN_2KEGG: hpa:HPAG1_0922 8.4e-25 amino acid ABC transporter, permease protein; Psort location: CytoplasmicMembrane, score: 10.00. (221 aa)    
Predicted Functional Partners:
YxeO
KEGG: bca:BCE_3546 7.5e-72 glnQ; amino acid ABC transporter-like protein K02028; Psort location: CytoplasmicMembrane, score: 9.49.
 0.999
TcyN
KEGG: bca:BCE_3546 2.1e-74 glnQ; amino acid ABC transporter-like protein K02028; Psort location: CytoplasmicMembrane, score: 9.49.
 0.996
YxeM_2
ABC transporter, substrate-binding protein, family 3; KEGG: eci:UTI89_C2121 7.5e-24 fliY; cystine-binding periplasmic protein precursor K02030:K02424; Psort location: Cytoplasmic, score: 8.87.
 0.996
YxeM_1
ABC transporter, substrate-binding protein, family 3; KEGG: eci:UTI89_C2121 3.4e-35 fliY; cystine-binding periplasmic protein precursor K02030:K02424; Psort location: Cytoplasmic, score: 8.87; Belongs to the bacterial solute-binding protein 3 family.
 0.994
GlnQ
KEGG: mmp:MMP0229 2.7e-58 ABC amino acid transport ATP binding protein K02028; Psort location: CytoplasmicMembrane, score: 9.49.
 
 0.982
ArtP_2
ABC transporter, substrate-binding protein, family 3; KEGG: eci:UTI89_C2121 7.5e-24 fliY; cystine-binding periplasmic protein precursor K02030:K02424.
 
 0.982
ArtP_1
ABC transporter, substrate-binding protein, family 3; KEGG: eci:UTI89_C2121 4.5e-26 fliY; cystine-binding periplasmic protein precursor K02030:K02424.
 
 0.982
ArtM
KEGG: efa:EF0892 1.2e-87 amino acid ABC transporter, ATP-binding protein K02028; Psort location: CytoplasmicMembrane, score: 9.49.
 
 0.981
GlnH
ABC transporter, substrate-binding protein, family 3; KEGG: eci:UTI89_C2121 4.5e-26 fliY; cystine-binding periplasmic protein precursor K02030:K02424.
 
 0.961
YxeN_1
KEGG: hpa:HPAG1_0922 5.5e-28 amino acid ABC transporter, permease protein; Psort location: CytoplasmicMembrane, score: 10.00.
  
  
 
0.914
Your Current Organism:
Clostridium hiranonis
NCBI taxonomy Id: 500633
Other names: Clostridium hiranonis DSM 13275, Clostridium hiranonis str. DSM 13275, Clostridium hiranonis strain DSM 13275, [. hiranonis DSM 13275, [Clostridium] hiranonis DSM 13275
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