node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
RlmB_1 | rplC | PROVRUST_04757 | PROVRUST_08357 | RNA methyltransferase, TrmH family; KEGG: plu:plu1274 1.3e-129 unnamed protein product; highly similar to putative tRNA/rRNA methyltransferase YfiF Escherichia coli K03214; Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family. | 50S ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit. | 0.674 |
RlmB_1 | rplK | PROVRUST_04757 | PROVRUST_05627 | RNA methyltransferase, TrmH family; KEGG: plu:plu1274 1.3e-129 unnamed protein product; highly similar to putative tRNA/rRNA methyltransferase YfiF Escherichia coli K03214; Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family. | Ribosomal protein L11; Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors. | 0.678 |
RlmB_1 | rplM | PROVRUST_04757 | PROVRUST_06162 | RNA methyltransferase, TrmH family; KEGG: plu:plu1274 1.3e-129 unnamed protein product; highly similar to putative tRNA/rRNA methyltransferase YfiF Escherichia coli K03214; Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family. | Ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly. | 0.678 |
RlmB_1 | rplO | PROVRUST_04757 | PROVRUST_08338 | RNA methyltransferase, TrmH family; KEGG: plu:plu1274 1.3e-129 unnamed protein product; highly similar to putative tRNA/rRNA methyltransferase YfiF Escherichia coli K03214; Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family. | Ribosomal protein L15; Binds to the 23S rRNA; Belongs to the universal ribosomal protein uL15 family. | 0.681 |
RlmB_1 | rplQ | PROVRUST_04757 | PROVRUST_08332 | RNA methyltransferase, TrmH family; KEGG: plu:plu1274 1.3e-129 unnamed protein product; highly similar to putative tRNA/rRNA methyltransferase YfiF Escherichia coli K03214; Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family. | Ribosomal protein L17; Belongs to the bacterial ribosomal protein bL17 family. | 0.687 |
RlmB_1 | rplU | PROVRUST_04757 | PROVRUST_06473 | RNA methyltransferase, TrmH family; KEGG: plu:plu1274 1.3e-129 unnamed protein product; highly similar to putative tRNA/rRNA methyltransferase YfiF Escherichia coli K03214; Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family. | Ribosomal protein L21; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family. | 0.688 |
RlmB_1 | rplX | PROVRUST_04757 | PROVRUST_08346 | RNA methyltransferase, TrmH family; KEGG: plu:plu1274 1.3e-129 unnamed protein product; highly similar to putative tRNA/rRNA methyltransferase YfiF Escherichia coli K03214; Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family. | Ribosomal protein L24; One of the proteins that surrounds the polypeptide exit tunnel on the outside of the subunit. | 0.673 |
RlmB_1 | rsfS | PROVRUST_04757 | PROVRUST_04738 | RNA methyltransferase, TrmH family; KEGG: plu:plu1274 1.3e-129 unnamed protein product; highly similar to putative tRNA/rRNA methyltransferase YfiF Escherichia coli K03214; Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family. | Iojap-like protein; Functions as a ribosomal silencing factor. Interacts with ribosomal protein L14 (rplN), blocking formation of intersubunit bridge B8. Prevents association of the 30S and 50S ribosomal subunits and the formation of functional ribosomes, thus repressing translation. | 0.694 |
RlmB_1 | truD | PROVRUST_04757 | PROVRUST_07211 | RNA methyltransferase, TrmH family; KEGG: plu:plu1274 1.3e-129 unnamed protein product; highly similar to putative tRNA/rRNA methyltransferase YfiF Escherichia coli K03214; Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family. | tRNA pseudouridine synthase D; Responsible for synthesis of pseudouridine from uracil-13 in transfer RNAs; Belongs to the pseudouridine synthase TruD family. | 0.680 |
RlmB_1 | ysxC | PROVRUST_04757 | PROVRUST_05665 | RNA methyltransferase, TrmH family; KEGG: plu:plu1274 1.3e-129 unnamed protein product; highly similar to putative tRNA/rRNA methyltransferase YfiF Escherichia coli K03214; Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family. | Ribosome biogenesis GTP-binding protein YsxC; Necessary for normal cell division and for the maintenance of normal septation; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. EngB GTPase family. | 0.740 |
rplC | RlmB_1 | PROVRUST_08357 | PROVRUST_04757 | 50S ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit. | RNA methyltransferase, TrmH family; KEGG: plu:plu1274 1.3e-129 unnamed protein product; highly similar to putative tRNA/rRNA methyltransferase YfiF Escherichia coli K03214; Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family. | 0.674 |
rplC | rplK | PROVRUST_08357 | PROVRUST_05627 | 50S ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit. | Ribosomal protein L11; Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors. | 0.998 |
rplC | rplM | PROVRUST_08357 | PROVRUST_06162 | 50S ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit. | Ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly. | 0.998 |
rplC | rplO | PROVRUST_08357 | PROVRUST_08338 | 50S ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit. | Ribosomal protein L15; Binds to the 23S rRNA; Belongs to the universal ribosomal protein uL15 family. | 0.999 |
rplC | rplQ | PROVRUST_08357 | PROVRUST_08332 | 50S ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit. | Ribosomal protein L17; Belongs to the bacterial ribosomal protein bL17 family. | 0.996 |
rplC | rplU | PROVRUST_08357 | PROVRUST_06473 | 50S ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit. | Ribosomal protein L21; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family. | 0.990 |
rplC | rplX | PROVRUST_08357 | PROVRUST_08346 | 50S ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit. | Ribosomal protein L24; One of the proteins that surrounds the polypeptide exit tunnel on the outside of the subunit. | 0.997 |
rplC | rsfS | PROVRUST_08357 | PROVRUST_04738 | 50S ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit. | Iojap-like protein; Functions as a ribosomal silencing factor. Interacts with ribosomal protein L14 (rplN), blocking formation of intersubunit bridge B8. Prevents association of the 30S and 50S ribosomal subunits and the formation of functional ribosomes, thus repressing translation. | 0.882 |
rplC | truD | PROVRUST_08357 | PROVRUST_07211 | 50S ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit. | tRNA pseudouridine synthase D; Responsible for synthesis of pseudouridine from uracil-13 in transfer RNAs; Belongs to the pseudouridine synthase TruD family. | 0.768 |
rplC | ysxC | PROVRUST_08357 | PROVRUST_05665 | 50S ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit. | Ribosome biogenesis GTP-binding protein YsxC; Necessary for normal cell division and for the maintenance of normal septation; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. EngB GTPase family. | 0.827 |