STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
oppCKEGG: baa:BA_0884 0.00046 binding-protein-dependent transport systems inner membrane component K00294; Psort location: CytoplasmicMembrane, score: 10.00. (302 aa)    
Predicted Functional Partners:
oppB
KEGG: rha:RHA1_ro09047 2.8e-40 ABC peptide transporter, permease component K02033; Psort location: CytoplasmicMembrane, score: 10.00.
 
 0.999
GsiA_6
ABC transporter, ATP-binding protein; KEGG: bur:Bcep18194_B0118 3.3e-94 oligopeptide/dipeptide ABC transporter, ATPase subunit K02031; Psort location: CytoplasmicMembrane, score: 9.98.
 
 0.999
GsiA_5
ABC transporter, ATP-binding protein; KEGG: bur:Bcep18194_B0119 1.2e-94 oligopeptide/dipeptide ABC transporter, ATPase subunit K02032; Psort location: CytoplasmicMembrane, score: 9.59.
 
 0.999
OppA_1
ABC transporter, substrate-binding protein, family 5; KEGG: shn:Shewana3_2650 1.0e-26 acetate kinase K00925; Psort location: Periplasmic, score: 10.00.
 
 0.991
OppA_3
ABC transporter, substrate-binding protein, family 5; KEGG: shn:Shewana3_2650 2.3e-21 acetate kinase K00925; Psort location: Periplasmic, score: 9.44.
 
 0.988
MppA_1
ABC transporter, substrate-binding protein, family 5; KEGG: shn:Shewana3_2650 5.1e-23 acetate kinase K00925; Psort location: Periplasmic, score: 9.44.
 
 0.982
GsiA_1
KEGG: rru:Rru_A2359 4.0e-112 oligopeptide/dipeptide ABC transporter, ATP-binding protein-like K06020; Psort location: CytoplasmicMembrane, score: 8.02.
  
 0.981
GsiA_4
KEGG: rru:Rru_A2359 2.0e-64 oligopeptide/dipeptide ABC transporter, ATP-binding protein-like K06020; Psort location: CytoplasmicMembrane, score: 8.02.
 
   
 0.954
GsiA_2
KEGG: pen:PSEEN1053 4.4e-99 dppF; dipeptide ABC transporter, ATP-binding protein; Belongs to the ABC transporter superfamily.
 
 0.945
dppB
KEGG: rha:RHA1_ro09047 1.2e-46 ABC peptide transporter, permease component K02033; Psort location: CytoplasmicMembrane, score: 10.00.
  
 0.884
Your Current Organism:
Providencia rustigianii
NCBI taxonomy Id: 500637
Other names: P. rustigianii DSM 4541, Providencia rustigianii DSM 4541, Providencia rustigianii str. DSM 4541, Providencia rustigianii strain DSM 4541
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.