STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Ddc_2Pyridoxal-dependent decarboxylase domain protein; KEGG: cps:CPS_1007 1.4e-16 putative decarboxylase K01580. (570 aa)    
Predicted Functional Partners:
EFB74023.1
Bacteriophage replication protein O; Psort location: Cytoplasmic, score: 8.96.
  
     0.712
EFB70868.1
Hypothetical protein.
  
     0.635
EFB70866.1
Hypothetical protein; Psort location: OuterMembrane, score: 9.49.
  
    0.607
EFB70718.1
Hypothetical protein; KEGG: azo:azo2314 2.6e-06 glycosyltransferase; Psort location: CytoplasmicMembrane, score: 10.00.
  
     0.557
EFB72130.1
Hypothetical protein.
  
     0.554
EFB71756.1
Transporter, major facilitator family protein; KEGG: saz:Sama_1053 0.0034 oxaloacetate decarboxylase K01570; Psort location: CytoplasmicMembrane, score: 10.00.
 
     0.533
EFB73624.1
SWIM zinc finger domain protein; Psort location: Cytoplasmic, score: 8.96.
  
     0.524
EFB72238.1
Outer membrane autotransporter barrel domain protein; KEGG: pen:PSEEN3028 1.9e-105 subtilisin-like serine protease; Psort location: OuterMembrane, score: 9.95.
  
    0.524
EFB70683.1
DNA-binding helix-turn-helix protein.
  
     0.518
EFB70684.1
HipA domain protein.
  
     0.476
Your Current Organism:
Providencia rustigianii
NCBI taxonomy Id: 500637
Other names: P. rustigianii DSM 4541, Providencia rustigianii DSM 4541, Providencia rustigianii str. DSM 4541, Providencia rustigianii strain DSM 4541
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.