STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RutBKEGG: bpm:BURPS1710b_A1005 9.6e-24 isochorismatase family protein K05993. (191 aa)    
Predicted Functional Partners:
RssA
Putative swarming motility regulation sensor protein RssA; KEGG: dar:Daro_2816 1.1e-43 ATP-binding region, ATPase-like:histidine kinase, HAMP region:histidine kinase A, N-terminal K07645; Psort location: CytoplasmicMembrane, score: 9.82.
   
   0.541
nadE
NAD+ synthase; Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source.
  
 
 0.515
birA
biotin--[acetyl-CoA-carboxylase] ligase; Acts both as a biotin--[acetyl-CoA-carboxylase] ligase and a biotin-operon repressor. In the presence of ATP, BirA activates biotin to form the BirA-biotinyl-5'-adenylate (BirA-bio-5'-AMP or holoBirA) complex. HoloBirA can either transfer the biotinyl moiety to the biotin carboxyl carrier protein (BCCP) subunit of acetyl-CoA carboxylase, or bind to the biotin operator site and inhibit transcription of the operon.
     
 0.504
NadR
Nicotinamide-nucleotide adenylyltransferase; KEGG: plu:plu0553 4.6e-191 nadR; transcriptional regulator NadR K00952:K06210:K06211.
     
 0.481
EFB73468.1
NlpC/P60 family protein; Psort location: Cytoplasmic, score: 8.96.
 
 
   0.447
NitA
Hydrolase, carbon-nitrogen family; KEGG: rso:RSc1823 5.3e-149 RS04252; probable nitrilase protein.
 
 
 
 0.443
rssB
Swarming motility regulation protein RssB; KEGG: rha:RHA1_ro05622 2.7e-26 response regulator (protein-glutamate methylesterase) K07669; Psort location: Cytoplasmic, score: 9.97.
       0.430
EFB72229.1
Metallo-beta-lactamase domain protein; KEGG: fnu:FN1848 8.5e-16 metal dependent hydrolase.
 
   0.418
AmiF
Hydrolase, carbon-nitrogen family; KEGG: btk:BT9727_3682 3.7e-14 possible amidohydrolase K01426; Psort location: Cytoplasmic, score: 8.96.
 
 
 
 0.415
guaA
GMP synthase (glutamine-hydrolyzing) domain protein; Catalyzes the synthesis of GMP from XMP.
     
 0.412
Your Current Organism:
Providencia rustigianii
NCBI taxonomy Id: 500637
Other names: P. rustigianii DSM 4541, Providencia rustigianii DSM 4541, Providencia rustigianii str. DSM 4541, Providencia rustigianii strain DSM 4541
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.