STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
vasAType VI secretion protein, VC_A0110 family; Psort location: Cytoplasmic, score: 8.96. (583 aa)    
Predicted Functional Partners:
EFB70434.1
Type VI secretion protein, VC_A0111 family.
 
  
 0.975
EFB70436.1
Type VI secretion system lysozyme-related protein.
 
  
 0.971
EFB70435.1
Type VI secretion lipoprotein, VC_A0113 family.
 
  
 0.970
EFB71275.1
Type VI secretion protein, VC_A0114 family.
 
 
 0.964
EFB70432.1
Type VI secretion-associated protein, VC_A0119 family.
 
  
 0.958
EFB70438.1
Hypothetical protein.
 
  
 0.943
EFB71274.1
Type VI secretion protein, EvpB/VC_A0108 family; KEGG: bpm:BURPS1710b_A0534 6.2e-116 hypothetical protein K00356.
 
  
 0.934
EFB71273.1
Type VI secretion protein, VC_A0107 family.
 
  
 0.928
EFB71276.1
Type IV / VI secretion system protein, DotU family.
 
  
 0.911
EFB70428.1
Hypothetical protein.
 
  
 0.899
Your Current Organism:
Providencia rustigianii
NCBI taxonomy Id: 500637
Other names: P. rustigianii DSM 4541, Providencia rustigianii DSM 4541, Providencia rustigianii str. DSM 4541, Providencia rustigianii strain DSM 4541
Server load: low (22%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.