Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
OOC52677.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (307 aa)    
Predicted Functional Partners:
guaA
Glutamine-hydrolyzing GMP synthase; Catalyzes the synthesis of GMP from XMP.
     
  0.701
OOC56364.1
Catalase HPII; Serves to protect cells from the toxic effects of hydrogen peroxide.
    
  0.566
OOC55553.1
Silent information regulator protein Sir2; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 
 0.555
OOC55087.1
Cell wall assembly protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
   0.547
NOSIN_09035
Hypothetical protein; Incomplete; partial in the middle of a contig; missing start; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
 0.532
OOC54302.1
Metallophosphoesterase; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
 0.507
OOC52676.1
DNA-binding response regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.500
OOC56904.1
Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.500
OOC55593.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
   
 
  0.472
OOC52980.1
Competence protein ComEC; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.455
Your Current Organism:
Nocardiopsis sinuspersici
NCBI taxonomy Id: 501010
Other names: CCUG 57624, DSM 45277, N. sinuspersici, Nocardiopsis sinuspersici Hamedi et al. 2010, Nocardiopsis sp. HM6, UTMC 00102, strain HM6
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