STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
OOC52768.1Alanine racemase; Derived by automated computational analysis using gene prediction method: Protein Homology. (408 aa)    
Predicted Functional Partners:
OOC54482.1
FAD-linked oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    0.791
OOC53022.1
SGNH hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.609
OOC56956.1
SGNH hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.605
OOC54552.1
Lipase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.591
OOC56200.1
Lysophospholipase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.519
purU
Formyltetrahydrofolate deformylase; Catalyzes the hydrolysis of 10-formyltetrahydrofolate (formyl-FH4) to formate and tetrahydrofolate (FH4).
       0.507
OOC53760.1
FAD-binding dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.466
OOC55621.1
Cardiolipin synthase B; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
    0.449
OOC56245.1
FAD-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    0.441
Your Current Organism:
Nocardiopsis sinuspersici
NCBI taxonomy Id: 501010
Other names: CCUG 57624, DSM 45277, N. sinuspersici, Nocardiopsis sinuspersici Hamedi et al. 2010, Nocardiopsis sp. HM6, UTMC 00102, strain HM6
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