Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
OOC56935.1Pilus assembly protein TadE; Derived by automated computational analysis using gene prediction method: Protein Homology. (118 aa)    
Predicted Functional Partners:
OOC52874.1
Septum formation initiator; Derived by automated computational analysis using gene prediction method: Protein Homology.
      0.931
OOC52875.1
Flp pilus assembly protein CpaB; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.915
OOC52871.1
Type II secretion system (T2SS), F family protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.869
OOC55612.1
Flp pilus assembly protein CpaB; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.832
OOC52872.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.768
OOC52873.1
Secretion protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.696
OOC53273.1
Type II secretion protein F; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.658
OOC56994.1
Type II secretion protein F; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.658
OOC56033.1
Type II secretion protein F; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.658
OOC56034.1
Type II secretion protein F; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.658
Your Current Organism:
Nocardiopsis sinuspersici
NCBI taxonomy Id: 501010
Other names: CCUG 57624, DSM 45277, N. sinuspersici, Nocardiopsis sinuspersici Hamedi et al. 2010, Nocardiopsis sp. HM6, UTMC 00102, strain HM6
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