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Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
OOC52987.1Alpha-amylase; Derived by automated computational analysis using gene prediction method: Protein Homology. (533 aa)    
Predicted Functional Partners:
OOC52636.1
Aminoglycoside phosphotransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 0.989
OOC53190.1
Alpha-amylase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
  0.920
OOC55048.1
4-alpha-glucanotransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.911
OOC54522.1
Glucohydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 
0.906
OOC53083.1
Beta-glucosidase; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
 0.895
OOC54160.1
Beta-glucosidase; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
 0.895
OOC54433.1
Glycogen debranching enzyme GlgX; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the glycosyl hydrolase 13 family.
 
 
 0.820
OOC56563.1
Glycosidase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 
0.790
OOC52637.1
Maltose alpha-D-glucosyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 
0.786
OOC53714.1
Alpha-glycosidase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 
0.784
Your Current Organism:
Nocardiopsis sinuspersici
NCBI taxonomy Id: 501010
Other names: CCUG 57624, DSM 45277, N. sinuspersici, Nocardiopsis sinuspersici Hamedi et al. 2010, Nocardiopsis sp. HM6, UTMC 00102, strain HM6
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