Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
OOC53393.1DNA starvation/stationary phase protection protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the Dps family. (197 aa)    
Predicted Functional Partners:
OOC54037.1
Osmotically inducible protein C; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.825
OOC56764.1
Flavodoxin; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.794
hpf
Ribosomal subunit interface protein; Required for dimerization of active 70S ribosomes into 100S ribosomes in stationary phase; 100S ribosomes are translationally inactive and sometimes present during exponential growth.
   
    0.732
OOC56364.1
Catalase HPII; Serves to protect cells from the toxic effects of hydrogen peroxide.
  
  
 0.553
hemH
Ferrochelatase; Catalyzes the ferrous insertion into protoporphyrin IX. Belongs to the ferrochelatase family.
  
 
  0.551
OOC55117.1
Antibiotic biosynthesis monooxygenase; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 
  0.521
OOC56493.1
Cation-transporting ATPase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.434
OOC53394.1
CdaR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.429
OOC56554.1
CsbD family protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the UPF0337 (CsbD) family.
  
  
 0.421
OOC57018.1
Oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.418
Your Current Organism:
Nocardiopsis sinuspersici
NCBI taxonomy Id: 501010
Other names: CCUG 57624, DSM 45277, N. sinuspersici, Nocardiopsis sinuspersici Hamedi et al. 2010, Nocardiopsis sp. HM6, UTMC 00102, strain HM6
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