Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
OOC53432.1Oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology. (337 aa)    
Predicted Functional Partners:
OOC53433.1
Xylose isomerase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
  0.837
OOC57027.1
Peptidase M20; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.820
OOC53434.1
Lactate dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the LDH2/MDH2 oxidoreductase family.
       0.818
OOC53436.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.818
OOC53435.1
Oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.777
OOC53437.1
Signal transduction protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
   0.541
OOC54128.1
Phenylacetic acid degradation protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
  0.541
OOC54842.1
Oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
  0.541
lysS
lysine--tRNA ligase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the class-II aminoacyl-tRNA synthetase family.
  
    0.493
OOC53064.1
Glycerophosphodiester phosphodiesterase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
  0.457
Your Current Organism:
Nocardiopsis sinuspersici
NCBI taxonomy Id: 501010
Other names: CCUG 57624, DSM 45277, N. sinuspersici, Nocardiopsis sinuspersici Hamedi et al. 2010, Nocardiopsis sp. HM6, UTMC 00102, strain HM6
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