Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
OOC53953.1Methyltransferase type 11; Derived by automated computational analysis using gene prediction method: Protein Homology. (193 aa)    
Predicted Functional Partners:
gcvP
Glycine dehydrogenase (aminomethyl-transferring); The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor; CO(2) is released and the remaining methylamine moiety is then transferred to the lipoamide cofactor of the H protein; Belongs to the GcvP family.
     
  0.683
OOC54238.1
poly(A) polymerase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
   0.642
OOC54329.1
Magnesium chelatase; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 0.593
NOSIN_09425
Permease; Frameshifted; internal stop; incomplete; partial in the middle of a contig; missing start; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 
 0.574
OOC55531.1
Polynucleotide kinase-phosphatase; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
   0.559
OOC55911.1
Kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
   0.559
OOC53951.1
Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.503
OOC53952.1
DNA-binding response regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.503
OOC53344.1
2-polyprenylphenol hydroxylase; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
 
 0.496
OOC55041.1
Peptidase M23; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.495
Your Current Organism:
Nocardiopsis sinuspersici
NCBI taxonomy Id: 501010
Other names: CCUG 57624, DSM 45277, N. sinuspersici, Nocardiopsis sinuspersici Hamedi et al. 2010, Nocardiopsis sp. HM6, UTMC 00102, strain HM6
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