Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
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Co-occurrence
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[Homology]
Score
OOC54830.1Dynein regulation protein LC7; Derived by automated computational analysis using gene prediction method: Protein Homology. (143 aa)    
Predicted Functional Partners:
OOC53090.1
ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   0.918
OOC52660.1
ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   0.917
OOC54641.1
ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   0.917
OOC54883.1
ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   0.917
OOC55192.1
ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   0.917
OOC52833.1
ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
   0.916
OOC57087.1
ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   0.916
OOC54380.1
ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
   0.915
OOC53089.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    0.796
OOC57196.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    0.794
Your Current Organism:
Nocardiopsis sinuspersici
NCBI taxonomy Id: 501010
Other names: CCUG 57624, DSM 45277, N. sinuspersici, Nocardiopsis sinuspersici Hamedi et al. 2010, Nocardiopsis sp. HM6, UTMC 00102, strain HM6
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