Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
OOC54937.1Glycoside hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology. (967 aa)    
Predicted Functional Partners:
rpsH
30S ribosomal protein S8; One of the primary rRNA binding proteins, it binds directly to 16S rRNA central domain where it helps coordinate assembly of the platform of the 30S subunit; Belongs to the universal ribosomal protein uS8 family.
    
   0.646
OOC55995.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.513
OOC57394.1
Methylamine utilization protein MauD; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.468
OOC53381.1
Glycosyl hydrolase family 5; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the glycosyl hydrolase 5 (cellulase A) family.
  
     0.448
OOC54100.1
Beta-mannosidase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.445
OOC54936.1
Recombinase RecQ; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.439
OOC53826.1
Protein phosphatase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.423
OOC54938.1
DNA topoisomerase IV; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.419
OOC55473.1
Nucleoside kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.414
OOC52898.1
Magnesium transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.401
Your Current Organism:
Nocardiopsis sinuspersici
NCBI taxonomy Id: 501010
Other names: CCUG 57624, DSM 45277, N. sinuspersici, Nocardiopsis sinuspersici Hamedi et al. 2010, Nocardiopsis sp. HM6, UTMC 00102, strain HM6
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