Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
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Co-occurrence
Co-expression
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[Homology]
Score
OOC55537.1C4-dicarboxylate ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (342 aa)    
Predicted Functional Partners:
OOC55535.1
Permease; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    0.920
OOC55536.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    0.887
OOC54845.1
C4-dicarboxylate ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.665
OOC54846.1
tRNA modification GTPase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
   
 0.645
OOC55538.1
Transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    
0.630
OOC56674.1
Tripartite tricarboxylate transporter TctA; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.471
OOC55534.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.422
OOC56676.1
Tricarboxylic transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
   
 0.414
Your Current Organism:
Nocardiopsis sinuspersici
NCBI taxonomy Id: 501010
Other names: CCUG 57624, DSM 45277, N. sinuspersici, Nocardiopsis sinuspersici Hamedi et al. 2010, Nocardiopsis sp. HM6, UTMC 00102, strain HM6
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