Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
OOC55896.1ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology. (300 aa)    
Predicted Functional Partners:
OOC55897.1
ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    0.900
OOC55616.1
ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.734
OOC56323.1
Multidrug ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    
0.606
OOC52713.1
ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    0.552
OOC53889.1
ABC transporter; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
  
 
  0.517
OOC52505.1
ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
  0.511
OOC55895.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.507
atpC
ATP synthase F1 subunit epsilon; Produces ATP from ADP in the presence of a proton gradient across the membrane.
    
   0.496
OOC53561.1
Antibiotic ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
   0.492
OOC55013.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
   0.492
Your Current Organism:
Nocardiopsis sinuspersici
NCBI taxonomy Id: 501010
Other names: CCUG 57624, DSM 45277, N. sinuspersici, Nocardiopsis sinuspersici Hamedi et al. 2010, Nocardiopsis sp. HM6, UTMC 00102, strain HM6
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