Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
OOC56230.1Peptidase; Derived by automated computational analysis using gene prediction method: Protein Homology. (477 aa)    
Predicted Functional Partners:
OOC57437.1
copC domain protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.839
OOC54842.1
Oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
  0.722
OOC54128.1
Phenylacetic acid degradation protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
  0.716
OOC55165.1
Peroxidase; Derived by automated computational analysis using gene prediction method: Protein Homology.
    0.691
OOC55164.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    0.530
OOC56231.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.527
OOC56123.1
4Fe-4S ferredoxin; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
  0.524
OOC54681.1
Dihydroorotate oxidase; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
  0.517
OOC55157.1
2Fe-2S ferredoxin; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
  0.478
OOC53240.1
Respiratory nitrate reductase subunit gamma; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
  0.476
Your Current Organism:
Nocardiopsis sinuspersici
NCBI taxonomy Id: 501010
Other names: CCUG 57624, DSM 45277, N. sinuspersici, Nocardiopsis sinuspersici Hamedi et al. 2010, Nocardiopsis sp. HM6, UTMC 00102, strain HM6
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