Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
OOC56291.1Two-component sensor histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology. (704 aa)    
Predicted Functional Partners:
OOC56794.1
Hybrid sensor histidine kinase/response regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 0.982
OOC57389.1
DNA-binding response regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  0.970
NOSIN_01595
tRNA-Arg; Incomplete; partial in the middle of a contig; missing stop; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  0.849
OOC56069.1
PAS domain-containing sensor histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
0.843
OOC56790.1
DNA-binding response regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  0.837
OOC55540.1
DNA-binding response regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  0.835
OOC56433.1
DNA-binding response regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  0.834
OOC52676.1
DNA-binding response regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  0.803
OOC55768.1
DNA-binding response regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  0.798
OOC53563.1
DNA-binding response regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  0.791
Your Current Organism:
Nocardiopsis sinuspersici
NCBI taxonomy Id: 501010
Other names: CCUG 57624, DSM 45277, N. sinuspersici, Nocardiopsis sinuspersici Hamedi et al. 2010, Nocardiopsis sp. HM6, UTMC 00102, strain HM6
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