STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ureR_1Urease operon transcriptional activator. (320 aa)    
Predicted Functional Partners:
barA_3
Signal transduction histidine-protein kinase BarA.
     
 0.725
SEH38080.1
Hopanoid-associated sugar epimerase.
 
     0.704
gltB_1
Ferredoxin-dependent glutamate synthase 1.
    
  0.687
soxS
Regulatory protein SoxS.
  
     0.592
rpoA
DNA-directed RNA polymerase subunit alpha; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
   0.551
trpE
Anthranilate synthase component 1.
     
 0.508
araC_1
Arabinose operon regulatory protein.
  
     0.506
btr_1
Bacillibactin transport regulator.
  
   0.500
SEH96649.1
Blue-light-activated protein.
     
 0.466
cdhR_5
Carnitine catabolism transcriptional activator.
  
   0.462
Your Current Organism:
Rhizobium tibeticum
NCBI taxonomy Id: 501024
Other names: CCBAU 85039, CGMCC 1.7071, LMG 24453, LMG:24453, R. tibeticum, Rhizobium sp. CCBAU 85039, Rhizobium tibeticum Hou et al. 2009
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