Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
dnaJ_2 | dnaK_1 | RTCCBAU85039_0516 | RTCCBAU85039_1141 | Chaperone protein DnaJ. | Heat shock protein 70; Acts as a chaperone; Belongs to the heat shock protein 70 family. | 0.998 |
dnaJ_2 | dnaK_2 | RTCCBAU85039_0516 | RTCCBAU85039_1279 | Chaperone protein DnaJ. | Heat shock protein 70. | 0.993 |
dnaJ_2 | grpE | RTCCBAU85039_0516 | RTCCBAU85039_1012 | Chaperone protein DnaJ. | HSP-70 cofactor; Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins, in association with DnaK and GrpE. It is the nucleotide exchange factor for DnaK and may function as a thermosensor. Unfolded proteins bind initially to DnaJ; upon interaction with the DnaJ-bound protein, DnaK hydrolyzes its bound ATP, resulting in the formation of a stable complex. GrpE releases ADP from DnaK; ATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction cycle. Several rounds of ATP-dependen [...] | 0.978 |
dnaJ_2 | lgrD_1 | RTCCBAU85039_0516 | RTCCBAU85039_6649 | Chaperone protein DnaJ. | Linear gramicidin synthase subunit D. | 0.986 |
dnaJ_2 | mnmE | RTCCBAU85039_0516 | RTCCBAU85039_0388 | Chaperone protein DnaJ. | tRNA modification GTPase MnmE; Exhibits a very high intrinsic GTPase hydrolysis rate. Involved in the addition of a carboxymethylaminomethyl (cmnm) group at the wobble position (U34) of certain tRNAs, forming tRNA- cmnm(5)s(2)U34; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. TrmE GTPase family. | 0.957 |
dnaJ_2 | rplK | RTCCBAU85039_0516 | RTCCBAU85039_6391 | Chaperone protein DnaJ. | 50S ribosomal protein L11; Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors. | 0.965 |
dnaJ_2 | rplM | RTCCBAU85039_0516 | RTCCBAU85039_3906 | Chaperone protein DnaJ. | 50S ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly. | 0.957 |
dnaJ_2 | rplN | RTCCBAU85039_0516 | RTCCBAU85039_3871 | Chaperone protein DnaJ. | Hypothetical protein; Binds to 23S rRNA. Forms part of two intersubunit bridges in the 70S ribosome; Belongs to the universal ribosomal protein uL14 family. | 0.964 |
dnaJ_2 | rplQ | RTCCBAU85039_0516 | RTCCBAU85039_3886 | Chaperone protein DnaJ. | 50S ribosomal protein L17. | 0.958 |
dnaJ_2 | sodB | RTCCBAU85039_0516 | RTCCBAU85039_1196 | Chaperone protein DnaJ. | Superoxide dismutase; Destroys radicals which are normally produced within the cells and which are toxic to biological systems. Belongs to the iron/manganese superoxide dismutase family. | 0.959 |
dnaK_1 | dnaJ_2 | RTCCBAU85039_1141 | RTCCBAU85039_0516 | Heat shock protein 70; Acts as a chaperone; Belongs to the heat shock protein 70 family. | Chaperone protein DnaJ. | 0.998 |
dnaK_1 | grpE | RTCCBAU85039_1141 | RTCCBAU85039_1012 | Heat shock protein 70; Acts as a chaperone; Belongs to the heat shock protein 70 family. | HSP-70 cofactor; Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins, in association with DnaK and GrpE. It is the nucleotide exchange factor for DnaK and may function as a thermosensor. Unfolded proteins bind initially to DnaJ; upon interaction with the DnaJ-bound protein, DnaK hydrolyzes its bound ATP, resulting in the formation of a stable complex. GrpE releases ADP from DnaK; ATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction cycle. Several rounds of ATP-dependen [...] | 0.999 |
dnaK_1 | lgrD_1 | RTCCBAU85039_1141 | RTCCBAU85039_6649 | Heat shock protein 70; Acts as a chaperone; Belongs to the heat shock protein 70 family. | Linear gramicidin synthase subunit D. | 0.519 |
dnaK_1 | rplK | RTCCBAU85039_1141 | RTCCBAU85039_6391 | Heat shock protein 70; Acts as a chaperone; Belongs to the heat shock protein 70 family. | 50S ribosomal protein L11; Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors. | 0.819 |
dnaK_1 | rplM | RTCCBAU85039_1141 | RTCCBAU85039_3906 | Heat shock protein 70; Acts as a chaperone; Belongs to the heat shock protein 70 family. | 50S ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly. | 0.843 |
dnaK_1 | rplN | RTCCBAU85039_1141 | RTCCBAU85039_3871 | Heat shock protein 70; Acts as a chaperone; Belongs to the heat shock protein 70 family. | Hypothetical protein; Binds to 23S rRNA. Forms part of two intersubunit bridges in the 70S ribosome; Belongs to the universal ribosomal protein uL14 family. | 0.974 |
dnaK_1 | sodB | RTCCBAU85039_1141 | RTCCBAU85039_1196 | Heat shock protein 70; Acts as a chaperone; Belongs to the heat shock protein 70 family. | Superoxide dismutase; Destroys radicals which are normally produced within the cells and which are toxic to biological systems. Belongs to the iron/manganese superoxide dismutase family. | 0.437 |
dnaK_2 | dnaJ_2 | RTCCBAU85039_1279 | RTCCBAU85039_0516 | Heat shock protein 70. | Chaperone protein DnaJ. | 0.993 |
dnaK_2 | grpE | RTCCBAU85039_1279 | RTCCBAU85039_1012 | Heat shock protein 70. | HSP-70 cofactor; Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins, in association with DnaK and GrpE. It is the nucleotide exchange factor for DnaK and may function as a thermosensor. Unfolded proteins bind initially to DnaJ; upon interaction with the DnaJ-bound protein, DnaK hydrolyzes its bound ATP, resulting in the formation of a stable complex. GrpE releases ADP from DnaK; ATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction cycle. Several rounds of ATP-dependen [...] | 0.997 |
dnaK_2 | lgrD_1 | RTCCBAU85039_1279 | RTCCBAU85039_6649 | Heat shock protein 70. | Linear gramicidin synthase subunit D. | 0.519 |
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