STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
vatVirginiamycin A acetyltransferase. (205 aa)    
Predicted Functional Partners:
phnL
Alpha-D-ribose 1-methylphosphonate 5-triphosphate synthase subunit PhnL.
 
     0.926
phnJ
Alpha-D-ribose 1-methylphosphonate 5-phosphate C-P lyase; Catalyzes the breakage of the C-P bond in alpha-D-ribose 1- methylphosphonate 5-phosphate (PRPn) forming alpha-D-ribose. Belongs to the PhnJ family.
 
     0.870
phnH
Alpha-D-ribose 1-methylphosphonate 5-triphosphate synthase subunit PhnH.
 
     0.867
phnI
Alpha-D-ribose 1-methylphosphonate 5-triphosphate synthase subunit PhnI.
 
     0.864
phnK
Putative phosphonates utilization ATP-binding protein PhnK.
 
     0.861
phnG
Alpha-D-ribose 1-methylphosphonate 5-triphosphate synthase subunit PhnG.
 
     0.856
yegW_1
Putative HTH-type transcriptional regulator YegW.
 
     0.766
phnM_1
Alpha-D-ribose 1-methylphosphonate 5-triphosphate diphosphatase.
 
     0.689
wcaJ_1
UDP-glucose:undecaprenyl-phosphate glucose-1-phosphate transferase.
  
  
 0.669
phnD
Phosphate-import protein PhnD precursor.
 
     0.653
Your Current Organism:
Rhizobium tibeticum
NCBI taxonomy Id: 501024
Other names: CCBAU 85039, CGMCC 1.7071, LMG 24453, LMG:24453, R. tibeticum, Rhizobium sp. CCBAU 85039, Rhizobium tibeticum Hou et al. 2009
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