STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
msbA_1Lipid A export ATP-binding/permease protein MsbA. (595 aa)    
Predicted Functional Partners:
lgrD_1
Linear gramicidin synthase subunit D.
  
 0.897
SEH60499.1
Putative multidrug export ATP-binding/permease protein.
  
 
0.799
lagD
Lactococcin-G-processing and transport ATP-binding protein LagD.
 
 
 
0.768
apxIB_1
RTX-I toxin determinant B.
 
 
 
0.756
dapB
4-hydroxy-tetrahydrodipicolinate reductase; Catalyzes the conversion of 4-hydroxy-tetrahydrodipicolinate (HTPA) to tetrahydrodipicolinate; Belongs to the DapB family.
       0.716
dnaK_1
Heat shock protein 70; Acts as a chaperone; Belongs to the heat shock protein 70 family.
  
 
 0.676
gpmA
2,3-bisphosphoglycerate-dependent phosphoglycerate mutase; Catalyzes the interconversion of 2-phosphoglycerate and 3- phosphoglycerate; Belongs to the phosphoglycerate mutase family. BPG- dependent PGAM subfamily.
       0.668
tagH
Teichoic acids export ATP-binding protein TagH.
  
 
  0.567
glk
Glucokinase; Belongs to the bacterial glucokinase family.
  
    0.540
podJ_3
Polar organelle development protein.
  
 
 0.540
Your Current Organism:
Rhizobium tibeticum
NCBI taxonomy Id: 501024
Other names: CCBAU 85039, CGMCC 1.7071, LMG 24453, LMG:24453, R. tibeticum, Rhizobium sp. CCBAU 85039, Rhizobium tibeticum Hou et al. 2009
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