STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
araA_1L-arabinose 1-dehydrogenase. (308 aa)    
Predicted Functional Partners:
araB_1
L-arabinolactonase.
 
 
  0.852
SEH68020.1
Fumarylacetoacetate (FAA) hydrolase family protein.
 
     0.652
SEH61364.1
dephospho-CoA kinase/protein folding accessory domain-containing protein.
       0.592
mro
Aldose 1-epimerase precursor; Converts alpha-aldose to the beta-anomer.
  
 
  0.590
hmp_1
3-ketosteroid-9-alpha-hydroxylase reductase subunit.
  
  
  0.580
lacZ
Beta-galactosidase; Belongs to the glycosyl hydrolase 2 family.
    
  0.579
SEI02764.1
Fumarylacetoacetate (FAA) hydrolase family protein.
  
     0.569
gno_1
Gluconate 5-dehydrogenase.
   
 
  0.558
bgaB
Beta-galactosidase bgaB.
   
 
  0.553
xynD
Bifunctional xylanase/deacetylase precursor.
       0.531
Your Current Organism:
Rhizobium tibeticum
NCBI taxonomy Id: 501024
Other names: CCBAU 85039, CGMCC 1.7071, LMG 24453, LMG:24453, R. tibeticum, Rhizobium sp. CCBAU 85039, Rhizobium tibeticum Hou et al. 2009
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