Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
cspA_2 | lgrD_1 | RTCCBAU85039_3287 | RTCCBAU85039_6649 | Hypothetical protein. | Linear gramicidin synthase subunit D. | 0.519 |
cspA_2 | rplP | RTCCBAU85039_3287 | RTCCBAU85039_3868 | Hypothetical protein. | 50S ribosomal protein L16; Binds 23S rRNA and is also seen to make contacts with the A and possibly P site tRNAs; Belongs to the universal ribosomal protein uL16 family. | 0.461 |
cspA_2 | rplS | RTCCBAU85039_3287 | RTCCBAU85039_0179 | Hypothetical protein. | 50S ribosomal protein L19; This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site. | 0.480 |
cspA_2 | rplT | RTCCBAU85039_3287 | RTCCBAU85039_1130 | Hypothetical protein. | 50S ribosomal protein L20; Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit. | 0.484 |
cspA_2 | rpoA | RTCCBAU85039_3287 | RTCCBAU85039_3885 | Hypothetical protein. | DNA-directed RNA polymerase subunit alpha; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.702 |
cspA_2 | rpoB | RTCCBAU85039_3287 | RTCCBAU85039_6395 | Hypothetical protein. | DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.708 |
cspA_2 | rpoZ | RTCCBAU85039_3287 | RTCCBAU85039_1335 | Hypothetical protein. | DNA-directed RNA polymerase subunit omega; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits. | 0.710 |
cspA_2 | rpsE | RTCCBAU85039_3287 | RTCCBAU85039_3878 | Hypothetical protein. | 30S ribosomal protein S5; Located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body. Belongs to the universal ribosomal protein uS5 family. | 0.470 |
cspA_2 | rpsL | RTCCBAU85039_3287 | RTCCBAU85039_6399 | Hypothetical protein. | Hypothetical protein; Interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone. Located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side and probably holding the rRNA structure together. The combined cluster of proteins S8, S12 and S17 appears to hold together the shoulder and platform of the 30S subunit. | 0.500 |
cspA_2 | rpsQ | RTCCBAU85039_3287 | RTCCBAU85039_3870 | Hypothetical protein. | 30S ribosomal protein S17; One of the primary rRNA binding proteins, it binds specifically to the 5'-end of 16S ribosomal RNA. | 0.471 |
lgrD_1 | cspA_2 | RTCCBAU85039_6649 | RTCCBAU85039_3287 | Linear gramicidin synthase subunit D. | Hypothetical protein. | 0.519 |
lgrD_1 | rplP | RTCCBAU85039_6649 | RTCCBAU85039_3868 | Linear gramicidin synthase subunit D. | 50S ribosomal protein L16; Binds 23S rRNA and is also seen to make contacts with the A and possibly P site tRNAs; Belongs to the universal ribosomal protein uL16 family. | 0.994 |
lgrD_1 | rplS | RTCCBAU85039_6649 | RTCCBAU85039_0179 | Linear gramicidin synthase subunit D. | 50S ribosomal protein L19; This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site. | 0.897 |
lgrD_1 | rplT | RTCCBAU85039_6649 | RTCCBAU85039_1130 | Linear gramicidin synthase subunit D. | 50S ribosomal protein L20; Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit. | 0.930 |
lgrD_1 | rpoA | RTCCBAU85039_6649 | RTCCBAU85039_3885 | Linear gramicidin synthase subunit D. | DNA-directed RNA polymerase subunit alpha; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.742 |
lgrD_1 | rpoB | RTCCBAU85039_6649 | RTCCBAU85039_6395 | Linear gramicidin synthase subunit D. | DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.653 |
lgrD_1 | rpoZ | RTCCBAU85039_6649 | RTCCBAU85039_1335 | Linear gramicidin synthase subunit D. | DNA-directed RNA polymerase subunit omega; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits. | 0.707 |
lgrD_1 | rpsE | RTCCBAU85039_6649 | RTCCBAU85039_3878 | Linear gramicidin synthase subunit D. | 30S ribosomal protein S5; Located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body. Belongs to the universal ribosomal protein uS5 family. | 0.744 |
lgrD_1 | rpsL | RTCCBAU85039_6649 | RTCCBAU85039_6399 | Linear gramicidin synthase subunit D. | Hypothetical protein; Interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone. Located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side and probably holding the rRNA structure together. The combined cluster of proteins S8, S12 and S17 appears to hold together the shoulder and platform of the 30S subunit. | 0.853 |
lgrD_1 | rpsQ | RTCCBAU85039_6649 | RTCCBAU85039_3870 | Linear gramicidin synthase subunit D. | 30S ribosomal protein S17; One of the primary rRNA binding proteins, it binds specifically to the 5'-end of 16S ribosomal RNA. | 0.989 |
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