Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
SEI06820.1 | aniA | RTCCBAU85039_4165 | RTCCBAU85039_4418 | Plastocyanin. | Copper-containing nitrite reductase precursor. | 0.891 |
SEI09291.1 | aniA | RTCCBAU85039_4419 | RTCCBAU85039_4418 | Zinc transporter ZupT. | Copper-containing nitrite reductase precursor. | 0.958 |
SEI18558.1 | aniA | RTCCBAU85039_5931 | RTCCBAU85039_4418 | Hypothetical protein. | Copper-containing nitrite reductase precursor. | 0.785 |
aniA | SEI06820.1 | RTCCBAU85039_4418 | RTCCBAU85039_4165 | Copper-containing nitrite reductase precursor. | Plastocyanin. | 0.891 |
aniA | SEI09291.1 | RTCCBAU85039_4418 | RTCCBAU85039_4419 | Copper-containing nitrite reductase precursor. | Zinc transporter ZupT. | 0.958 |
aniA | SEI18558.1 | RTCCBAU85039_4418 | RTCCBAU85039_5931 | Copper-containing nitrite reductase precursor. | Hypothetical protein. | 0.785 |
aniA | bcp_2 | RTCCBAU85039_4418 | RTCCBAU85039_6197 | Copper-containing nitrite reductase precursor. | Blue copper protein. | 0.964 |
aniA | ccoP | RTCCBAU85039_4418 | RTCCBAU85039_6191 | Copper-containing nitrite reductase precursor. | Cytochrome c oxidase subunit III; C-type cytochrome. Part of the cbb3-type cytochrome c oxidase complex. | 0.846 |
aniA | lgrB_1 | RTCCBAU85039_4418 | RTCCBAU85039_6650 | Copper-containing nitrite reductase precursor. | Linear gramicidin synthase subunit B. | 0.758 |
aniA | lgrD_1 | RTCCBAU85039_4418 | RTCCBAU85039_6649 | Copper-containing nitrite reductase precursor. | Linear gramicidin synthase subunit D. | 0.815 |
aniA | petE | RTCCBAU85039_4418 | RTCCBAU85039_2751 | Copper-containing nitrite reductase precursor. | Plastocyanin precursor. | 0.785 |
aniA | tatB | RTCCBAU85039_4418 | RTCCBAU85039_3191 | Copper-containing nitrite reductase precursor. | Sec-independent protein translocase protein TatB; Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin- arginine motif in their signal peptide across membranes. Together with TatC, TatB is part of a receptor directly interacting with Tat signal peptides. TatB may form an oligomeric binding site that transiently accommodates folded Tat precursor proteins before their translocation. | 0.759 |
aniA | tatC | RTCCBAU85039_4418 | RTCCBAU85039_3190 | Copper-containing nitrite reductase precursor. | Sec-independent protein translocase protein TatC; Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin- arginine motif in their signal peptide across membranes. Together with TatB, TatC is part of a receptor directly interacting with Tat signal peptides. | 0.767 |
bcp_2 | aniA | RTCCBAU85039_6197 | RTCCBAU85039_4418 | Blue copper protein. | Copper-containing nitrite reductase precursor. | 0.964 |
bcp_2 | ccoP | RTCCBAU85039_6197 | RTCCBAU85039_6191 | Blue copper protein. | Cytochrome c oxidase subunit III; C-type cytochrome. Part of the cbb3-type cytochrome c oxidase complex. | 0.486 |
ccoP | aniA | RTCCBAU85039_6191 | RTCCBAU85039_4418 | Cytochrome c oxidase subunit III; C-type cytochrome. Part of the cbb3-type cytochrome c oxidase complex. | Copper-containing nitrite reductase precursor. | 0.846 |
ccoP | bcp_2 | RTCCBAU85039_6191 | RTCCBAU85039_6197 | Cytochrome c oxidase subunit III; C-type cytochrome. Part of the cbb3-type cytochrome c oxidase complex. | Blue copper protein. | 0.486 |
ccoP | lgrD_1 | RTCCBAU85039_6191 | RTCCBAU85039_6649 | Cytochrome c oxidase subunit III; C-type cytochrome. Part of the cbb3-type cytochrome c oxidase complex. | Linear gramicidin synthase subunit D. | 0.592 |
ccoP | petE | RTCCBAU85039_6191 | RTCCBAU85039_2751 | Cytochrome c oxidase subunit III; C-type cytochrome. Part of the cbb3-type cytochrome c oxidase complex. | Plastocyanin precursor. | 0.431 |
lgrB_1 | aniA | RTCCBAU85039_6650 | RTCCBAU85039_4418 | Linear gramicidin synthase subunit B. | Copper-containing nitrite reductase precursor. | 0.758 |
page 1 of 2