STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEI13883.1Putative transposase. (158 aa)    
Predicted Functional Partners:
xerD_6
Tyrosine recombinase XerD.
     0.821
xerD_5
Tyrosine recombinase XerD; Belongs to the 'phage' integrase family.
     0.794
SEI13888.1
Hypothetical protein.
       0.773
SEH87305.1
Blue-light-activated histidine kinase.
 
  
 0.770
barA_3
Signal transduction histidine-protein kinase BarA.
   
 0.761
virA
Wide host range VirA protein.
 
 
 0.737
barA_2
Signal transduction histidine-protein kinase BarA.
   
 0.693
SEH86564.1
Blue-light-activated protein.
   
 0.693
SEI17288.1
Blue-light-activated protein.
   
 0.693
cysNC
Bifunctional enzyme CysN/CysC; Catalyzes the synthesis of activated sulfate. Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. CysN/NodQ subfamily.
   
 
 0.614
Your Current Organism:
Rhizobium tibeticum
NCBI taxonomy Id: 501024
Other names: CCBAU 85039, CGMCC 1.7071, LMG 24453, LMG:24453, R. tibeticum, Rhizobium sp. CCBAU 85039, Rhizobium tibeticum Hou et al. 2009
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