Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
SEI15694.1 | cycB_2 | RTCCBAU85039_5296 | RTCCBAU85039_5299 | Hypothetical protein. | Cyclodextrin-binding protein precursor. | 0.472 |
SEI15694.1 | lutR_6 | RTCCBAU85039_5296 | RTCCBAU85039_5297 | Hypothetical protein. | L-lactate utilization operon repressor. | 0.559 |
SEI15694.1 | metB | RTCCBAU85039_5296 | RTCCBAU85039_5298 | Hypothetical protein. | Cystathionine gamma-synthase. | 0.559 |
cycB_2 | SEI15694.1 | RTCCBAU85039_5299 | RTCCBAU85039_5296 | Cyclodextrin-binding protein precursor. | Hypothetical protein. | 0.472 |
cycB_2 | lutR_6 | RTCCBAU85039_5299 | RTCCBAU85039_5297 | Cyclodextrin-binding protein precursor. | L-lactate utilization operon repressor. | 0.854 |
cycB_2 | metB | RTCCBAU85039_5299 | RTCCBAU85039_5298 | Cyclodextrin-binding protein precursor. | Cystathionine gamma-synthase. | 0.819 |
lutR_6 | SEI15694.1 | RTCCBAU85039_5297 | RTCCBAU85039_5296 | L-lactate utilization operon repressor. | Hypothetical protein. | 0.559 |
lutR_6 | cycB_2 | RTCCBAU85039_5297 | RTCCBAU85039_5299 | L-lactate utilization operon repressor. | Cyclodextrin-binding protein precursor. | 0.854 |
lutR_6 | metB | RTCCBAU85039_5297 | RTCCBAU85039_5298 | L-lactate utilization operon repressor. | Cystathionine gamma-synthase. | 0.837 |
metB | SEI15694.1 | RTCCBAU85039_5298 | RTCCBAU85039_5296 | Cystathionine gamma-synthase. | Hypothetical protein. | 0.559 |
metB | cycB_2 | RTCCBAU85039_5298 | RTCCBAU85039_5299 | Cystathionine gamma-synthase. | Cyclodextrin-binding protein precursor. | 0.819 |
metB | lutR_6 | RTCCBAU85039_5298 | RTCCBAU85039_5297 | Cystathionine gamma-synthase. | L-lactate utilization operon repressor. | 0.837 |