B5F15_01765 protein (Butyricicoccus pullicaecorum)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

B5F15_01765

Unannotated protein; Activation of anaerobic ribonucleoside-triphosphate reductase under anaerobic conditions by generation of an organic free radical, using S-adenosylmethionine and reduced flavodoxin as cosubstrates to produce 5'-deoxy-adenosine. (168 aa)

Predicted Functional Partners:

B5F15_01775

0.990

B5F15_01770

0.986

B5F15_02910

0.907

B5F15_09185

0.774

guaA

0.656

B5F15_15790

0.604

B5F15_10135

0.584

purF

0.460

B5F15_06090

0.449

B5F15_09735

0.419

Your Current Organism:

Butyricicoccus pullicaecorum

NCBI taxonomy Id: 501571
Other names: B. pullicaecorum, Butyricicoccus pullicaecorum Eeckhaut et al. 2008, CCUG 55265, Clostridiaceae bacterium 25-3, DSM 23266, LMG 24109, LMG:24109, strain 25-3

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
B5F15_01765	B5F15_01770	GCA_900143195_01508	GCA_900143195_01509	Unannotated protein; Activation of anaerobic ribonucleoside-triphosphate reductase under anaerobic conditions by generation of an organic free radical, using S-adenosylmethionine and reduced flavodoxin as cosubstrates to produce 5'-deoxy-adenosine.	Unannotated protein.	0.986
B5F15_01765	B5F15_01775	GCA_900143195_01508	GCA_900143195_01510	Unannotated protein; Activation of anaerobic ribonucleoside-triphosphate reductase under anaerobic conditions by generation of an organic free radical, using S-adenosylmethionine and reduced flavodoxin as cosubstrates to produce 5'-deoxy-adenosine.	Unannotated protein.	0.990
B5F15_01765	B5F15_02910	GCA_900143195_01508	GCA_900143195_00421	Unannotated protein; Activation of anaerobic ribonucleoside-triphosphate reductase under anaerobic conditions by generation of an organic free radical, using S-adenosylmethionine and reduced flavodoxin as cosubstrates to produce 5'-deoxy-adenosine.	Unannotated protein.	0.907
B5F15_01765	B5F15_06090	GCA_900143195_01508	GCA_900143195_01079	Unannotated protein; Activation of anaerobic ribonucleoside-triphosphate reductase under anaerobic conditions by generation of an organic free radical, using S-adenosylmethionine and reduced flavodoxin as cosubstrates to produce 5'-deoxy-adenosine.	Unannotated protein.	0.449
B5F15_01765	B5F15_09185	GCA_900143195_01508	GCA_900143195_02408	Unannotated protein; Activation of anaerobic ribonucleoside-triphosphate reductase under anaerobic conditions by generation of an organic free radical, using S-adenosylmethionine and reduced flavodoxin as cosubstrates to produce 5'-deoxy-adenosine.	Unannotated protein.	0.774
B5F15_01765	B5F15_09735	GCA_900143195_01508	GCA_900143195_00816	Unannotated protein; Activation of anaerobic ribonucleoside-triphosphate reductase under anaerobic conditions by generation of an organic free radical, using S-adenosylmethionine and reduced flavodoxin as cosubstrates to produce 5'-deoxy-adenosine.	Unannotated protein.	0.419
B5F15_01765	B5F15_10135	GCA_900143195_01508	GCA_900143195_00896	Unannotated protein; Activation of anaerobic ribonucleoside-triphosphate reductase under anaerobic conditions by generation of an organic free radical, using S-adenosylmethionine and reduced flavodoxin as cosubstrates to produce 5'-deoxy-adenosine.	Unannotated protein.	0.584
B5F15_01765	B5F15_15790	GCA_900143195_01508	GCA_900143195_02984	Unannotated protein; Activation of anaerobic ribonucleoside-triphosphate reductase under anaerobic conditions by generation of an organic free radical, using S-adenosylmethionine and reduced flavodoxin as cosubstrates to produce 5'-deoxy-adenosine.	Unannotated protein.	0.604
B5F15_01765	guaA	GCA_900143195_01508	GCA_900143195_02291	Unannotated protein; Activation of anaerobic ribonucleoside-triphosphate reductase under anaerobic conditions by generation of an organic free radical, using S-adenosylmethionine and reduced flavodoxin as cosubstrates to produce 5'-deoxy-adenosine.	Unannotated protein; Catalyzes the synthesis of GMP from XMP.	0.656
B5F15_01765	purF	GCA_900143195_01508	GCA_900143195_02960	Unannotated protein; Activation of anaerobic ribonucleoside-triphosphate reductase under anaerobic conditions by generation of an organic free radical, using S-adenosylmethionine and reduced flavodoxin as cosubstrates to produce 5'-deoxy-adenosine.	Unannotated protein; Catalyzes the formation of phosphoribosylamine from phosphoribosylpyrophosphate (PRPP) and glutamine.	0.460
B5F15_01770	B5F15_01765	GCA_900143195_01509	GCA_900143195_01508	Unannotated protein.	Unannotated protein; Activation of anaerobic ribonucleoside-triphosphate reductase under anaerobic conditions by generation of an organic free radical, using S-adenosylmethionine and reduced flavodoxin as cosubstrates to produce 5'-deoxy-adenosine.	0.986
B5F15_01770	B5F15_01775	GCA_900143195_01509	GCA_900143195_01510	Unannotated protein.	Unannotated protein.	0.934
B5F15_01775	B5F15_01765	GCA_900143195_01510	GCA_900143195_01508	Unannotated protein.	Unannotated protein; Activation of anaerobic ribonucleoside-triphosphate reductase under anaerobic conditions by generation of an organic free radical, using S-adenosylmethionine and reduced flavodoxin as cosubstrates to produce 5'-deoxy-adenosine.	0.990
B5F15_01775	B5F15_01770	GCA_900143195_01510	GCA_900143195_01509	Unannotated protein.	Unannotated protein.	0.934
B5F15_02910	B5F15_01765	GCA_900143195_00421	GCA_900143195_01508	Unannotated protein.	Unannotated protein; Activation of anaerobic ribonucleoside-triphosphate reductase under anaerobic conditions by generation of an organic free radical, using S-adenosylmethionine and reduced flavodoxin as cosubstrates to produce 5'-deoxy-adenosine.	0.907
B5F15_02910	guaA	GCA_900143195_00421	GCA_900143195_02291	Unannotated protein.	Unannotated protein; Catalyzes the synthesis of GMP from XMP.	0.417
B5F15_06090	B5F15_01765	GCA_900143195_01079	GCA_900143195_01508	Unannotated protein.	Unannotated protein; Activation of anaerobic ribonucleoside-triphosphate reductase under anaerobic conditions by generation of an organic free radical, using S-adenosylmethionine and reduced flavodoxin as cosubstrates to produce 5'-deoxy-adenosine.	0.449
B5F15_09185	B5F15_01765	GCA_900143195_02408	GCA_900143195_01508	Unannotated protein.	Unannotated protein; Activation of anaerobic ribonucleoside-triphosphate reductase under anaerobic conditions by generation of an organic free radical, using S-adenosylmethionine and reduced flavodoxin as cosubstrates to produce 5'-deoxy-adenosine.	0.774
B5F15_09735	B5F15_01765	GCA_900143195_00816	GCA_900143195_01508	Unannotated protein.	Unannotated protein; Activation of anaerobic ribonucleoside-triphosphate reductase under anaerobic conditions by generation of an organic free radical, using S-adenosylmethionine and reduced flavodoxin as cosubstrates to produce 5'-deoxy-adenosine.	0.419
B5F15_09735	guaA	GCA_900143195_00816	GCA_900143195_02291	Unannotated protein.	Unannotated protein; Catalyzes the synthesis of GMP from XMP.	0.997

page 1 of 2

Server load: low (16%) [HD]

Permalink

Network

Neighborhood

Experiments

Fusion

Databases

Cooccurrence

Textmining

Coexpression

© STRING Consortium 2024

Credits

Access

Info

About