STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Hoch_0022PFAM: General secretory system II protein E domain protein; KEGG: mxa:MXAN_4667 general secretion pathway protein E. (244 aa)    
Predicted Functional Partners:
Hoch_4826
PFAM: Type II secretion system F domain; KEGG: geo:Geob_3372 type II secretion system protein.
 
 
 0.964
Hoch_2610
TIGRFAM: general secretion pathway protein F; PFAM: Type II secretion system F domain; KEGG: afw:Anae109_0728 general secretion pathway protein F.
 
 
 0.922
Hoch_0248
TIGRFAM: type IV pilus assembly protein PilM; KEGG: afw:Anae109_0686 type IV pilus assembly protein PilM.
 
 
 0.908
Hoch_0427
Peptidase A24A domain protein; Cleaves type-4 fimbrial leader sequence and methylates the N- terminal (generally Phe) residue.
 
 
 0.847
Hoch_4827
KEGG: gsu:GSU1492 twitching motility protein PilT; TIGRFAM: twitching motility protein; PFAM: type II secretion system protein E; SMART: AAA ATPase.
  
 0.797
Hoch_6344
TIGRFAM: twitching motility protein; PFAM: type II secretion system protein E; KEGG: gme:Gmet_0260 pilus retraction protein PilT.
  
 0.792
Hoch_4155
KEGG: scl:sce4274 fimbiral protein PilA.
 
  
 0.786
Hoch_6390
PFAM: General secretory system II protein E domain protein; KEGG: ade:Adeh_0249 heat repeat-containing PBS lyase.
  
     0.771
Hoch_0501
PFAM: Peptidoglycan-binding lysin domain; KEGG: ade:Adeh_2701 peptidoglycan-binding LysM.
  
 
   0.679
Hoch_2616
PFAM: cell division protein FtsA; KEGG: afw:Anae109_0722 fimbrial assembly family protein.
 
 
 0.660
Your Current Organism:
Haliangium ochraceum
NCBI taxonomy Id: 502025
Other names: H. ochraceum DSM 14365, Haliangium ochraceum DSM 14365, Haliangium ochraceum SMP-2, Haliangium ochraceum str. DSM 14365, Haliangium ochraceum strain DSM 14365, myxobacterium SMP-2
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.