STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
speAArginine decarboxylase; Catalyzes the biosynthesis of agmatine from arginine. (650 aa)    
Predicted Functional Partners:
Hoch_5460
PFAM: Arginase/agmatinase/formiminoglutamase; KEGG: noc:Noc_1712 arginase/agmatinase/formiminoglutamase; Belongs to the arginase family.
 
 
 0.951
Hoch_6757
PFAM: Porphyromonas-type peptidyl-arginine deiminase; KEGG: hha:Hhal_1254 peptidyl-arginine deiminase; Belongs to the agmatine deiminase family.
 
  
 0.943
Hoch_6353
Agmatine deiminase; PFAM: Porphyromonas-type peptidyl-arginine deiminase; KEGG: pla:Plav_2804 agmatine deiminase; Belongs to the agmatine deiminase family.
 
  
 0.941
Hoch_4839
PFAM: arginine N-succinyltransferase beta subunit; KEGG: scl:sce1638 arginine N-succinyltransferase.
     
  0.900
argH
TIGRFAM: argininosuccinate lyase; PFAM: fumarate lyase; KEGG: ppd:Ppro_3168 argininosuccinate lyase.
     
 0.833
speE-2
Spermidine synthase; Catalyzes the irreversible transfer of a propylamine group from the amino donor S-adenosylmethioninamine (decarboxy-AdoMet) to putrescine (1,4-diaminobutane) to yield spermidine.
    
 0.668
Hoch_0025
KEGG: scl:sce0567 UvrD/Rep helicase family protein.
       0.529
Hoch_6505
Carboxynorspermidine decarboxylase; Catalyzes the decarboxylation of carboxynorspermidine and carboxyspermidine; Belongs to the Orn/Lys/Arg decarboxylase class-II family. NspC subfamily.
 
  
 0.517
speE
Spermine synthase; Catalyzes the irreversible transfer of a propylamine group from the amino donor S-adenosylmethioninamine (decarboxy-AdoMet) to putrescine (1,4-diaminobutane) to yield spermidine.
     
  0.499
Hoch_0024
PFAM: O-antigen polymerase; KEGG: scl:sce0883 polysaccharide polymerase.
  
    0.410
Your Current Organism:
Haliangium ochraceum
NCBI taxonomy Id: 502025
Other names: H. ochraceum DSM 14365, Haliangium ochraceum DSM 14365, Haliangium ochraceum SMP-2, Haliangium ochraceum str. DSM 14365, Haliangium ochraceum strain DSM 14365, myxobacterium SMP-2
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