STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Hoch_0064PFAM: regulatory protein TetR; KEGG: reh:H16_A2259 transcriptional regulator, TetR/AcrR-family. (242 aa)    
Predicted Functional Partners:
Hoch_6580
PFAM: regulatory protein TetR; KEGG: sfu:Sfum_1401 transcriptional regulator, TetR family.
  
     0.543
Hoch_0066
PFAM: Lantibiotic dehydratase domain protein; KEGG: hypothetical protein.
     
 0.531
fdhD
Formate dehydrogenase family accessory protein FdhD; Required for formate dehydrogenase (FDH) activity. Acts as a sulfur carrier protein that transfers sulfur from IscS to the molybdenum cofactor prior to its insertion into FDH. Belongs to the FdhD family.
       0.530
Hoch_0067
PFAM: cytochrome P450; KEGG: bja:bll6537 putative cytochrome P450.
       0.530
Hoch_2592
PFAM: regulatory protein TetR; KEGG: scl:sce6236 TetR family transcriptional regulator.
  
     0.518
Hoch_0063
Transcriptional regulator, XRE family; PFAM: helix-turn-helix domain protein; SMART: helix-turn-helix domain protein; KEGG: mxa:MXAN_0633 DNA-binding protein.
 
     0.502
Your Current Organism:
Haliangium ochraceum
NCBI taxonomy Id: 502025
Other names: H. ochraceum DSM 14365, Haliangium ochraceum DSM 14365, Haliangium ochraceum SMP-2, Haliangium ochraceum str. DSM 14365, Haliangium ochraceum strain DSM 14365, myxobacterium SMP-2
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.