STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Hoch_0099PFAM: General secretory system II protein E domain protein; PBS lyase HEAT domain protein repeat-containing protein; KEGG: ank:AnaeK_0259 general secretory system II protein E domain protein. (768 aa)    
Predicted Functional Partners:
Hoch_0098
PFAM: RDD domain containing protein; KEGG: mxa:MXAN_1131 hypothetical protein.
 
     0.856
Hoch_6810
KEGG: scl:sce6926 hypothetical protein.
  
     0.774
Hoch_0352
KEGG: mxa:MXAN_0371 hypothetical protein.
  
     0.773
Hoch_4447
KEGG: scl:sce3653 hypothetical protein.
  
     0.772
Hoch_0258
PFAM: TPR repeat-containing protein; SMART: Tetratricopeptide repeat; KEGG: mxa:MXAN_5766 TPR domain-containing protein.
  
     0.767
Hoch_1897
KEGG: ade:Adeh_0936 hypothetical protein.
  
     0.765
Hoch_6867
PFAM: Roadblock/LC7 family protein; KEGG: mxa:MXAN_1926 gliding motility protein MglB.
  
     0.751
Hoch_0073
PFAM: General secretory system II protein E domain protein; KEGG: mxa:MXAN_3836 general secretion pathway protein E.
  
     0.746
Hoch_4573
PFAM: Tetratricopeptide TPR_2 repeat protein; TPR repeat-containing protein; SMART: Tetratricopeptide repeat; KEGG: scl:sce2921 TPR repeat-containing protein.
 
 
   0.728
Hoch_4616
FHA domain containing protein; PFAM: Forkhead-associated protein; SMART: Forkhead-associated protein; KEGG: scl:sce8329 FHA domain-containing protein.
  
     0.713
Your Current Organism:
Haliangium ochraceum
NCBI taxonomy Id: 502025
Other names: H. ochraceum DSM 14365, Haliangium ochraceum DSM 14365, Haliangium ochraceum SMP-2, Haliangium ochraceum str. DSM 14365, Haliangium ochraceum strain DSM 14365, myxobacterium SMP-2
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.