STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Hoch_0180PFAM: globin; KEGG: hypothetical protein. (133 aa)    
Predicted Functional Partners:
Hoch_6818
PFAM: peptidase S1 and S6 chymotrypsin/Hap; SMART: peptidase S1 and S6 chymotrypsin/Hap; KEGG: trypsin epsilon.
  
     0.653
Hoch_0179
PFAM: protein of unknown function DUF540; KEGG: hypothetical protein.
       0.631
Hoch_1512
TIGRFAM: YD repeat protein; KEGG: bpd:BURPS668_0606 rhs family protein.
  
     0.572
Hoch_0055
PFAM: peptidase S1 and S6 chymotrypsin/Hap; SMART: peptidase S1 and S6 chymotrypsin/Hap; KEGG: GJ12687 gene product from transcript GJ12687- RA.
  
     0.565
Hoch_5751
TIGRFAM: YD repeat protein; KEGG: nmu:Nmul_A1373 integrins alpha chain.
  
     0.562
Hoch_6795
TIGRFAM: Myxococcales GC_trans_RRR domain protein; KEGG: ade:Adeh_2592 hypothetical protein.
  
     0.552
Hoch_2343
PFAM: DSBA oxidoreductase; KEGG: scl:sce1376 DSBA oxidoreductase.
  
  
 0.532
Hoch_1510
KEGG: hypothetical protein.
  
     0.461
Hoch_0178
Hypothetical protein; KEGG: gbm:Gbem_2063 NHL repeat containing protein.
       0.421
Hoch_0181
KEGG: scl:sce2448 lysine 2,3-aminomutase; TIGRFAM: lysine 2,3-aminomutase YodO family protein; PFAM: Radical SAM domain protein.
       0.411
Your Current Organism:
Haliangium ochraceum
NCBI taxonomy Id: 502025
Other names: H. ochraceum DSM 14365, Haliangium ochraceum DSM 14365, Haliangium ochraceum SMP-2, Haliangium ochraceum str. DSM 14365, Haliangium ochraceum strain DSM 14365, myxobacterium SMP-2
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.