STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Hoch_0210PFAM: sugar transferase; KEGG: scl:sce0882 glycosyltransferase. (243 aa)    
Predicted Functional Partners:
Hoch_0081
KEGG: mxa:MXAN_1025 capsular exopolysaccharide family protein; TIGRFAM: capsular exopolysaccharide family; PFAM: lipopolysaccharide biosynthesis protein; ATPase-like, ParA/MinD.
 
  
 0.939
Hoch_0204
ATPase involved in chromosome partitioning-like protein; KEGG: scl:sce0878 hypothetical protein.
 
  
 0.861
Hoch_0207
PFAM: glycosyl transferase group 1; KEGG: scl:sce1025 glycosyltransferase.
 
  
 0.767
Hoch_0211
PFAM: polysaccharide export protein; Soluble ligand binding domain; KEGG: scl:sce0873 outer membrane polysaccharide exporter.
 
  
 0.753
Hoch_6499
PFAM: polysaccharide export protein; Soluble ligand binding domain; KEGG: mxa:MXAN_1915 polysaccharide biosynthesis/export protein.
 
  
 0.731
Hoch_0082
PFAM: polysaccharide biosynthesis protein CapD; Male sterility domain; 3-beta hydroxysteroid dehydrogenase/isomerase; short-chain dehydrogenase/reductase SDR; dTDP-4-dehydrorhamnose reductase; NAD-dependent epimerase/dehydratase; KEGG: ank:AnaeK_4411 polysaccharide biosynthesis protein CapD.
  
 0.715
Hoch_0024
PFAM: O-antigen polymerase; KEGG: scl:sce0883 polysaccharide polymerase.
 
  
 0.710
Hoch_0209
Putative anti-sigma regulatory factor, serine/threonine protein kinase; KEGG: scl:sce0881 anti-sigma factor.
 
     0.642
Hoch_3839
PFAM: polysaccharide biosynthesis protein; virulence factor MVIN family protein; KEGG: scl:sce0874 oligosaccharyltransferase.
 
  
 0.642
Hoch_0205
PFAM: lipopolysaccharide biosynthesis protein; KEGG: scl:sce0879 protein kinase involved in polysaccharide biosynthesis.
 
  
 0.635
Your Current Organism:
Haliangium ochraceum
NCBI taxonomy Id: 502025
Other names: H. ochraceum DSM 14365, Haliangium ochraceum DSM 14365, Haliangium ochraceum SMP-2, Haliangium ochraceum str. DSM 14365, Haliangium ochraceum strain DSM 14365, myxobacterium SMP-2
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