STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Hoch_0351Membrane-associated zinc metalloprotease; KEGG: scl:sce7888 membrane-associated protease; TIGRFAM: membrane-associated zinc metalloprotease; PFAM: peptidase M50; PDZ/DHR/GLGF domain protein; SMART: PDZ/DHR/GLGF domain protein. (549 aa)    
Predicted Functional Partners:
Hoch_0486
Undecaprenyl diphosphate synthase; Catalyzes the condensation of isopentenyl diphosphate (IPP) with allylic pyrophosphates generating different type of terpenoids.
 
  
 0.748
Hoch_3972
TIGRFAM: outer membrane protein assembly complex, YaeT protein; PFAM: surface antigen (D15); surface antigen variable number repeat protein; KEGG: afw:Anae109_1120 surface antigen (D15).
  
 0.744
Hoch_0352
KEGG: mxa:MXAN_0371 hypothetical protein.
 
     0.626
Hoch_3695
PFAM: surface antigen (D15); surface antigen variable number repeat protein; KEGG: gsu:GSU2268 outer membrane protein, putative.
  
  
 0.624
Hoch_0485
PFAM: phosphatidate cytidylyltransferase; KEGG: scl:sce6194 phosphatidate cytidylyltransferase; Belongs to the CDS family.
  
    0.602
Hoch_5623
PFAM: WD40 domain protein beta Propeller; KEGG: scl:sce7969 hypothetical protein.
 
  
 0.535
Hoch_5265
PFAM: surface antigen (D15); surface antigen variable number repeat protein; KEGG: ank:AnaeK_0172 surface antigen (D15).
 
  
 0.517
Hoch_2516
KEGG: mxa:MXAN_5808 carboxyl-terminal protease family protein; TIGRFAM: carboxyl-terminal protease; PFAM: peptidase S41; PDZ/DHR/GLGF domain protein; protein of unknown function DUF1058; SH3 type 3 domain protein; SMART: peptidase S41; PDZ/DHR/GLGF domain protein; Belongs to the peptidase S41A family.
 
  
 0.497
Hoch_6714
PFAM: ferredoxin-dependent glutamate synthase; glutamate synthase alpha subunit domain protein; glutamate synthase; glutamine amidotransferase class-II; KEGG: mxa:MXAN_3917 glutamate synthase, large subunit.
  
  
 0.491
proS
prolyl-tRNA synthetase; Catalyzes the attachment of proline to tRNA(Pro) in a two- step reaction: proline is first activated by ATP to form Pro-AMP and then transferred to the acceptor end of tRNA(Pro). As ProRS can inadvertently accommodate and process non-cognate amino acids such as alanine and cysteine, to avoid such errors it has two additional distinct editing activities against alanine. One activity is designated as 'pretransfer' editing and involves the tRNA(Pro)-independent hydrolysis of activated Ala-AMP. The other activity is designated 'posttransfer' editing and involves dea [...]
 
    0.477
Your Current Organism:
Haliangium ochraceum
NCBI taxonomy Id: 502025
Other names: H. ochraceum DSM 14365, Haliangium ochraceum DSM 14365, Haliangium ochraceum SMP-2, Haliangium ochraceum str. DSM 14365, Haliangium ochraceum strain DSM 14365, myxobacterium SMP-2
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