STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Hoch_0356PFAM: FecR protein; KEGG: scl:sce2186 hypothetical protein. (512 aa)    
Predicted Functional Partners:
Hoch_0355
RNA polymerase, sigma-24 subunit, ECF subfamily; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; Sigma-70 region 4 type 2; KEGG: mxa:MXAN_4733 ECF subfamily RNA polymerase sigma factor.
  
 
 0.831
Hoch_0354
KEGG: hypothetical protein.
       0.773
Hoch_0353
Hypothetical protein.
       0.718
Hoch_4270
PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: mxa:MXAN_5023 TonB dependent receptor.
  
 
 0.598
Hoch_5509
PFAM: TonB-dependent receptor plug; KEGG: scl:sce4255 Oar protein.
  
  
 0.477
Hoch_6126
PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: mxa:MXAN_4746 TonB-dependent receptor.
  
  
 0.477
Hoch_6222
PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: pat:Patl_2865 TonB-dependent receptor.
  
  
 0.477
Hoch_0411
TIGRFAM: TonB family protein; PFAM: TonB-dependent receptor; TonB-dependent receptor plug; Gram-negative tonB protein; KEGG: mxa:MXAN_0821 TonB family protein.
  
  
 0.476
Hoch_1367
TIGRFAM: amino acid adenylation domain protein; PFAM: AMP-dependent synthetase and ligase; Thioesterase; phosphopantetheine-binding; condensation domain protein; KEGG: mxa:MXAN_3779 non-ribosomal peptide synthetase/polyketide synthase.
  
 
 0.473
Hoch_1750
TIGRFAM: amino acid adenylation domain protein; PFAM: AMP-dependent synthetase and ligase; Beta- ketoacyl synthase; aminotransferase class-III; Acyl transferase; Luciferase-like, subgroup; phosphopantetheine- binding; condensation domain protein; KEGG: rso:RS05860 peptide synthetase protein.
  
 
 0.456
Your Current Organism:
Haliangium ochraceum
NCBI taxonomy Id: 502025
Other names: H. ochraceum DSM 14365, Haliangium ochraceum DSM 14365, Haliangium ochraceum SMP-2, Haliangium ochraceum str. DSM 14365, Haliangium ochraceum strain DSM 14365, myxobacterium SMP-2
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.