STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Hoch_0421PFAM: GtrA family protein; KEGG: afw:Anae109_2953 GtrA family protein. (184 aa)    
Predicted Functional Partners:
Hoch_0422
PFAM: glycosyl transferase family 2; KEGG: afw:Anae109_2588 dolichyl-phosphate beta-D- mannosyltransferase.
 
  
 0.845
Hoch_3616
Hypothetical protein.
  
     0.512
apaG
PFAM: ApaG domain protein; KEGG: scl:sce4391 ApaG.
       0.475
Hoch_4977
PFAM: type III restriction protein res subunit; helicase domain protein; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicase; helicase domain protein; KEGG: scl:sce6811 DNA repair protein.
  
     0.410
Hoch_0419
PFAM: periplasmic binding protein; KEGG: dal:Dalk_0759 periplasmic binding protein.
       0.405
Your Current Organism:
Haliangium ochraceum
NCBI taxonomy Id: 502025
Other names: H. ochraceum DSM 14365, Haliangium ochraceum DSM 14365, Haliangium ochraceum SMP-2, Haliangium ochraceum str. DSM 14365, Haliangium ochraceum strain DSM 14365, myxobacterium SMP-2
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.