STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Hoch_0504PFAM: protein of unknown function DUF420; KEGG: ank:AnaeK_0947 protein of unknown function DUF420. (187 aa)    
Predicted Functional Partners:
Hoch_5990
PFAM: electron transport protein SCO1/SenC; KEGG: afw:Anae109_2865 electron transport protein SCO1/SenC.
  
 0.886
ctaB
Protoheme IX farnesyltransferase; Converts heme B (protoheme IX) to heme O by substitution of the vinyl group on carbon 2 of heme B porphyrin ring with a hydroxyethyl farnesyl side group.
 
    0.836
Hoch_2479
PFAM: cytochrome oxidase assembly; KEGG: mca:MCA1778 cytochrome oxidase assembly protein.
 
    0.593
Hoch_5430
KEGG: ank:AnaeK_3565 hypothetical protein.
  
     0.496
Hoch_2185
TIGRFAM: iron-sulfur cluster assembly accessory protein; PFAM: HesB/YadR/YfhF-family protein; KEGG: scl:sce5870 hypothetical protein; Belongs to the HesB/IscA family.
  
     0.446
Hoch_5564
KEGG: pen:PSEEN0134 hypothetical protein.
  
     0.444
Hoch_2191
TIGRFAM: iron-sulfur cluster assembly accessory protein; PFAM: HesB/YadR/YfhF-family protein; KEGG: avn:Avin_40380 iron-sulfur biogenesis protein; Belongs to the HesB/IscA family.
  
     0.429
Your Current Organism:
Haliangium ochraceum
NCBI taxonomy Id: 502025
Other names: H. ochraceum DSM 14365, Haliangium ochraceum DSM 14365, Haliangium ochraceum SMP-2, Haliangium ochraceum str. DSM 14365, Haliangium ochraceum strain DSM 14365, myxobacterium SMP-2
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.