STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Hoch_0562PFAM: protein of unknown function DUF362; KEGG: sfu:Sfum_1330 protein of unknown function DUF362. (479 aa)    
Predicted Functional Partners:
Hoch_0561
PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: scl:sce1086 putative ferredoxin.
 
     0.953
Hoch_0560
PFAM: aldo/keto reductase; KEGG: dma:DMR_27570 aldo/keto reductase family protein.
 
     0.850
Hoch_0563
KEGG: sfu:Sfum_1331 hypothetical protein.
       0.781
Hoch_3513
PFAM: protein of unknown function DUF362; KEGG: scl:sce2567 hypothetical protein.
  
     0.765
Hoch_3647
PFAM: protein of unknown function DUF362; KEGG: scl:sce5027 iron-sulfur cluster-binding protein.
  
     0.682
Hoch_4069
Putative transcriptional regulator, Crp/Fnr family; PFAM: cyclic nucleotide-binding; SMART: cyclic nucleotide-binding; KEGG: scl:sce9009 putative cAMP binding protein.
  
     0.616
Hoch_0209
Putative anti-sigma regulatory factor, serine/threonine protein kinase; KEGG: scl:sce0881 anti-sigma factor.
  
     0.564
Hoch_0024
PFAM: O-antigen polymerase; KEGG: scl:sce0883 polysaccharide polymerase.
  
   
 0.531
Hoch_4615
PFAM: Tetratricopeptide TPR_2 repeat protein; PBS lyase HEAT domain protein repeat-containing protein; Tetratricopeptide TPR_4; TPR repeat-containing protein; SMART: Tetratricopeptide repeat; PBS lyase HEAT domain protein repeat-containing protein; KEGG: scl:sce1616 TPR domain-containing protein.
  
     0.504
Hoch_0564
Acetylornithine transaminase; PFAM: aminotransferase class-III; KEGG: sat:SYN_01215 4-aminobutyrate aminotransferase; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.
       0.484
Your Current Organism:
Haliangium ochraceum
NCBI taxonomy Id: 502025
Other names: H. ochraceum DSM 14365, Haliangium ochraceum DSM 14365, Haliangium ochraceum SMP-2, Haliangium ochraceum str. DSM 14365, Haliangium ochraceum strain DSM 14365, myxobacterium SMP-2
Server load: low (22%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.