STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Hoch_1206PFAM: DEAD/DEAH box helicase domain protein; helicase domain protein; SMART: DEAD-like helicase; helicase domain protein; KEGG: scl:sce7687 ATP-dependent helicase. (711 aa)    
Predicted Functional Partners:
Hoch_1205
KEGG: pna:Pnap_4278 methyl-accepting chemotaxis protein.
 
     0.948
Hoch_1203
Hypothetical protein; KEGG: scl:sce7682 bacteriophage phiC31 resistance gene.
 
     0.945
Hoch_1204
PFAM: PglZ domain protein; KEGG: pna:Pnap_4279 alkaline phosphatase domain- containing protein.
 
     0.945
Hoch_1202
KEGG: pna:Pnap_4283 hypothetical protein.
 
     0.943
Hoch_1201
PFAM: NERD domain protein; tyrosine protein kinase; SMART: serine/threonine protein kinase; tyrosine protein kinase; KEGG: scl:sce7675 protein kinase.
 
     0.824
Hoch_0603
KEGG: acp:A2cp1_1159 putative ATP/GTP binding protein.
 
     0.783
Hoch_1237
KEGG: acp:A2cp1_1159 putative ATP/GTP binding protein.
 
     0.783
Hoch_1199
Hypothetical protein.
       0.762
Hoch_1200
Hypothetical protein.
       0.762
Hoch_0602
PFAM: PglZ domain protein; KEGG: acp:A2cp1_1157 PglZ domain protein.
  
     0.694
Your Current Organism:
Haliangium ochraceum
NCBI taxonomy Id: 502025
Other names: H. ochraceum DSM 14365, Haliangium ochraceum DSM 14365, Haliangium ochraceum SMP-2, Haliangium ochraceum str. DSM 14365, Haliangium ochraceum strain DSM 14365, myxobacterium SMP-2
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