STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Hoch_1249PFAM: MgtC/SapB transporter; KEGG: smd:Smed_0348 MgtC/SapB transporter. (157 aa)    
Predicted Functional Partners:
Hoch_3733
PFAM: VTC domain; KEGG: ank:AnaeK_3394 hypothetical protein.
  
    0.675
Hoch_1250
PFAM: glycoside hydrolase family 3 domain protein; KEGG: hypothetical protein; Belongs to the glycosyl hydrolase 3 family.
       0.523
Hoch_0499
TIGRFAM: ATPase, P-type (transporting), HAD superfamily, subfamily IC; PFAM: E1-E2 ATPase-associated domain protein; cation transporting ATPase domain protein; Haloacid dehalogenase domain protein hydrolase; KEGG: hch:HCH_00429 cation transport ATPase.
  
 
 0.510
Hoch_2747
TIGRFAM: ATPase, P-type (transporting), HAD superfamily, subfamily IC; PFAM: E1-E2 ATPase-associated domain protein; cation transporting ATPase domain protein; Haloacid dehalogenase domain protein hydrolase; KEGG: pin:Ping_2670 ATPase, P-type (transporting), HAD superfamily, subfamily IC.
  
 
 0.510
Hoch_5905
TIGRFAM: competence/damage-inducible protein CinA; PFAM: CinA domain protein; molybdopterin binding domain; KEGG: acp:A2cp1_3752 competence/damage-inducible protein CinA; Belongs to the CinA family.
  
  
 0.434
Your Current Organism:
Haliangium ochraceum
NCBI taxonomy Id: 502025
Other names: H. ochraceum DSM 14365, Haliangium ochraceum DSM 14365, Haliangium ochraceum SMP-2, Haliangium ochraceum str. DSM 14365, Haliangium ochraceum strain DSM 14365, myxobacterium SMP-2
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