STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Hoch_1272PFAM: Serine/threonine protein kinase-related; tyrosine protein kinase; WD40 repeat, subgroup; SMART: serine/threonine protein kinase; tyrosine protein kinase; WD-40 repeat protein; KEGG: scl:sce5991 protein kinase. (1190 aa)    
Predicted Functional Partners:
Hoch_1566
PFAM: HEAT domain containing protein; PBS lyase HEAT domain protein repeat-containing protein; SMART: WD-40 repeat protein; PBS lyase HEAT domain protein repeat-containing protein; KEGG: scl:sce_pseudo_02 pseudogene.
  
    0.755
Hoch_0034
Hypothetical protein; KEGG: scl:sce7447 capsule biosynthesis protein CapB, (pXO2-58).
 
     0.741
Hoch_5572
KEGG: scl:sce1942 hypothetical protein.
  
     0.716
Hoch_5180
PFAM: band 7 protein; KEGG: scl:sce5384 membrane protease subunit stomatin/prohibitin-like protein.
  
     0.715
Hoch_3184
FHA domain containing protein; PFAM: Forkhead-associated protein; SMART: Forkhead-associated protein; KEGG: scl:sce5690 FHA domain-containing protein.
  
 
   0.681
Hoch_2983
KEGG: scl:sce0708 phenazine biosynthesis protein.
  
     0.667
Hoch_3804
PFAM: metallophosphoesterase; KEGG: scl:sce7712 hypothetical protein.
  
    0.664
Hoch_2218
RNA polymerase, sigma-24 subunit, ECF subfamily; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: Sigma-70 region 4 type 2; KEGG: scl:sce7130 ECF family RNA polymerase sigma factor.
  
 
   0.645
Hoch_5667
KEGG: scl:sce1566 hypothetical protein.
  
    0.635
Hoch_2158
FHA domain containing protein; PFAM: Forkhead-associated protein; SMART: Forkhead-associated protein; KEGG: scl:sce5690 FHA domain-containing protein.
  
 
   0.619
Your Current Organism:
Haliangium ochraceum
NCBI taxonomy Id: 502025
Other names: H. ochraceum DSM 14365, Haliangium ochraceum DSM 14365, Haliangium ochraceum SMP-2, Haliangium ochraceum str. DSM 14365, Haliangium ochraceum strain DSM 14365, myxobacterium SMP-2
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