STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Hoch_1334PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: scl:sce8549 putative short-chain dehydrogenase. (254 aa)    
Predicted Functional Partners:
Hoch_4638
PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: serine 3-dehydrogenase; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
 
    0.773
Hoch_1750
TIGRFAM: amino acid adenylation domain protein; PFAM: AMP-dependent synthetase and ligase; Beta- ketoacyl synthase; aminotransferase class-III; Acyl transferase; Luciferase-like, subgroup; phosphopantetheine- binding; condensation domain protein; KEGG: rso:RS05860 peptide synthetase protein.
  
 
 0.527
Hoch_6853
PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: cja:CJA_0839 oxidoreductase, short chain dehydrogenase/reductase family; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
  
   0.474
Hoch_4199
PFAM: MaoC domain protein dehydratase; KEGG: pla:Plav_1800 3-alpha,7-alpha, 12-alpha- trihydroxy-5-beta-cholest-24-enoyl-CoAhydratase.
 
 0.460
hlaB
PFAM: KR domain protein; Acyl transferase; short- chain dehydrogenase/reductase SDR; Beta-ketoacyl synthase; Alcohol dehydrogenase GroES domain protein; alpha/beta hydrolase fold; Alcohol dehydrogenase zinc-binding domain protein; NAD-dependent epimerase/dehydratase; phosphopantetheine-binding; KEGG: mxa:MXAN_4527 polyketide synthase.
  
 
 0.429
Hoch_5652
TIGRFAM: malonyl CoA-acyl carrier protein transacylase; PFAM: Acyl transferase; KEGG: glo:Glov_1938 malonyl CoA-acyl carrier protein transacylase.
 
 
 0.423
Hoch_1367
TIGRFAM: amino acid adenylation domain protein; PFAM: AMP-dependent synthetase and ligase; Thioesterase; phosphopantetheine-binding; condensation domain protein; KEGG: mxa:MXAN_3779 non-ribosomal peptide synthetase/polyketide synthase.
  
 
 0.416
Hoch_1333
Hypothetical protein; KEGG: sde:Sde_2598 PAS/PAC sensor signal transduction histidine kinase.
       0.404
Your Current Organism:
Haliangium ochraceum
NCBI taxonomy Id: 502025
Other names: H. ochraceum DSM 14365, Haliangium ochraceum DSM 14365, Haliangium ochraceum SMP-2, Haliangium ochraceum str. DSM 14365, Haliangium ochraceum strain DSM 14365, myxobacterium SMP-2
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