STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Hoch_1494KEGG: dda:Dd703_0712 hypothetical protein. (770 aa)    
Predicted Functional Partners:
Hoch_4031
Hypothetical protein; KEGG: bmj:BMULJ_03886 putative pilus assembly protein FimV.
  
     0.768
Hoch_1712
PFAM: Erythromycin esterase; KEGG: bxe:Bxe_C1280 protein-L-isoaspartate (D- aspartate) O-methyltransferase.
  
     0.763
Hoch_0068
TIGRFAM: cysteine-rich repeat protein; KEGG: hypothetical protein.
  
 
   0.760
Hoch_0117
TIGRFAM: SpoIID/LytB domain protein; PFAM: Stage II sporulation D domain protein; KEGG: gbm:Gbem_2437 SpoIID/LytB domain protein.
  
     0.737
Hoch_1497
PFAM: type I phosphodiesterase/nucleotide pyrophosphatase; KEGG: dze:Dd1591_0726 hypothetical protein.
  
     0.735
Hoch_1493
PFAM: Lanthionine synthetase C family protein; KEGG: mxa:MXAN_6388 lanthionine synthetase C family protein.
       0.727
Hoch_5587
PFAM: protein of unknown function DUF324.
  
     0.724
Hoch_5370
KEGG: afw:Anae109_3731 hypothetical protein.
  
     0.706
Hoch_1661
KEGG: noc:Noc_1610 hypothetical protein.
  
     0.670
Hoch_6273
PFAM: Hyalin; KEGG: mxa:MXAN_1046 FG-GAP repeat-HVR domain- containing protein.
  
     0.663
Your Current Organism:
Haliangium ochraceum
NCBI taxonomy Id: 502025
Other names: H. ochraceum DSM 14365, Haliangium ochraceum DSM 14365, Haliangium ochraceum SMP-2, Haliangium ochraceum str. DSM 14365, Haliangium ochraceum strain DSM 14365, myxobacterium SMP-2
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.