STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Hoch_1537KEGG: pca:Pcar_2892 hypothetical protein. (322 aa)    
Predicted Functional Partners:
Hoch_1538
Hypothetical protein; KEGG: bra:BRADO3379 PE-PGRS family protein (fragment).
       0.788
Hoch_1536
Hypothetical protein; KEGG: proteophosphoglycan 5.
       0.773
Hoch_1539
Hypothetical protein.
       0.773
Hoch_1540
KEGG: ppd:Ppro_2998 methyl-accepting chemotaxis sensory transducer.
       0.773
Hoch_1535
Hypothetical protein.
       0.648
Hoch_1541
PFAM: Peptidoglycan-binding domain 1 protein.
       0.620
Hoch_3043
KEGG: hypothetical protein.
  
  
 0.585
Hoch_3039
Hypothetical protein.
  
  
 0.564
Hoch_1545
PFAM: GPW/gp25 family protein; KEGG: xfn:XfasM23_1162 gpW/GP25 family protein.
  
  
 0.559
Hoch_1534
Hypothetical protein.
       0.553
Your Current Organism:
Haliangium ochraceum
NCBI taxonomy Id: 502025
Other names: H. ochraceum DSM 14365, Haliangium ochraceum DSM 14365, Haliangium ochraceum SMP-2, Haliangium ochraceum str. DSM 14365, Haliangium ochraceum strain DSM 14365, myxobacterium SMP-2
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.