STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Hoch_1545PFAM: GPW/gp25 family protein; KEGG: xfn:XfasM23_1162 gpW/GP25 family protein. (143 aa)    
Predicted Functional Partners:
Hoch_1546
Hypothetical protein; KEGG: gem:GM21_3652 baseplate J family protein.
  
 
 0.872
Hoch_3609
Phage tail protein; KEGG: gsu:GSU0989 NHL repeat-containing protein; TIGRFAM: phage tail protein; PFAM: PASTA domain containing protein; SMART: PASTA domain containing protein.
  
 
 0.847
Hoch_1533
KEGG: plu:plu1706 hypothetical protein.
  
 
 0.831
Hoch_3661
TIGRFAM: conserved hypothetical protein; PFAM: conserved hypothetical protein; KEGG: noc:Noc_1873 phage tail region protein.
  
   0.823
Hoch_1542
Hypothetical protein; KEGG: aeh:Mlg_1145 rhs element Vgr protein.
  
  
 0.800
Hoch_0662
KEGG: mxa:MXAN_1845 putative phage late control gene D protein.
  
 
 0.797
Hoch_0852
KEGG: mxa:MXAN_1845 putative phage late control gene D protein.
  
 
 0.797
Hoch_3664
KEGG: gsu:GSU0982 hypothetical protein.
  
 
 0.797
Hoch_1543
Hypothetical protein.
       0.773
Hoch_1544
Hypothetical protein.
       0.773
Your Current Organism:
Haliangium ochraceum
NCBI taxonomy Id: 502025
Other names: H. ochraceum DSM 14365, Haliangium ochraceum DSM 14365, Haliangium ochraceum SMP-2, Haliangium ochraceum str. DSM 14365, Haliangium ochraceum strain DSM 14365, myxobacterium SMP-2
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.