STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Hoch_1606RNA polymerase, sigma-24 subunit, ECF subfamily; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; KEGG: mxa:MXAN_0233 RNA polymerase sigma-70 factor, group 3; Belongs to the sigma-70 factor family. ECF subfamily. (161 aa)    
Predicted Functional Partners:
Hoch_1608
PFAM: peptidase C14 caspase catalytic subunit p20; KEGG: acp:A2cp1_0979 peptidase C14 caspase catalytic subunit P20.
 
   0.947
Hoch_1607
KEGG: acp:A2cp1_0978 hypothetical protein.
  
   0.845
Hoch_3116
PFAM: peptidase C14 caspase catalytic subunit p20; KEGG: scl:sce6601 WD-40 repeat-containing protein.
  
     0.542
Hoch_1605
PFAM: tyrosine protein kinase; SMART: serine/threonine protein kinase; tyrosine protein kinase; KEGG: ade:Adeh_2796 serine/threonine protein kinase.
   
   0.498
Hoch_6495
SMART: Tetratricopeptide repeat; KEGG: mxa:MXAN_1922 TPR repeat-containing protein.
  
     0.496
Hoch_0411
TIGRFAM: TonB family protein; PFAM: TonB-dependent receptor; TonB-dependent receptor plug; Gram-negative tonB protein; KEGG: mxa:MXAN_0821 TonB family protein.
  
  
 0.467
Hoch_5090
KEGG: mxa:MXAN_6695 DifB protein.
  
     0.446
Hoch_6126
PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: mxa:MXAN_4746 TonB-dependent receptor.
  
    0.441
Hoch_3173
KEGG: mxa:MXAN_6594 hypothetical protein.
  
     0.413
Hoch_5548
Response regulator receiver protein; PFAM: heat shock protein DnaJ domain protein; KEGG: acp:A2cp1_0763 response regulator receiver protein.
  
     0.406
Your Current Organism:
Haliangium ochraceum
NCBI taxonomy Id: 502025
Other names: H. ochraceum DSM 14365, Haliangium ochraceum DSM 14365, Haliangium ochraceum SMP-2, Haliangium ochraceum str. DSM 14365, Haliangium ochraceum strain DSM 14365, myxobacterium SMP-2
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.