STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Hoch_1730TIGRFAM: cysteine-rich repeat protein; Myxococcales GC_trans_RRR domain protein; PFAM: Thrombospondin type 3 repeat; KEGG: scl:sce6661 putative thrombospondin family protein. (780 aa)    
Predicted Functional Partners:
Hoch_4651
PFAM: Thrombospondin type 3 repeat; KEGG: scl:sce5935 thrombospondin-like alanine-rich exported protein.
  
     0.763
Hoch_1731
PFAM: OmpA/MotB domain protein; Thrombospondin type 3 repeat; KEGG: mxa:MXAN_5598 OmpA domain-containing protein.
 
    
0.695
Hoch_5779
PFAM: OmpA/MotB domain protein; Thrombospondin type 3 repeat; KEGG: mxa:MXAN_2090 OmpA domain-containing protein.
  
     0.688
Hoch_3905
PFAM: Thrombospondin type 3 repeat; KEGG: ade:Adeh_3645 OmpA/MotB family outer membrane protein.
  
     0.681
Hoch_6539
KEGG: afw:Anae109_2880 hypothetical protein.
  
     0.583
Hoch_5345
KEGG: afw:Anae109_2871 hypothetical protein.
  
     0.582
Hoch_0876
PFAM: peptidase domain protein; peptidase S1 and S6 chymotrypsin/Hap; Thrombospondin type 3 repeat; KEGG: scl:sce1515 putative endopeptidase; Belongs to the peptidase S1B family.
  
     0.555
Hoch_3457
PFAM: low-density lipoprotein receptor YWTD repeat; SMART: low-density lipoprotein receptor YWTD repeat; KEGG: LRP5; low density lipoprotein receptor- related protein 5; K03068 low density lipoprotein receptor-related protein 5/6.
  
     0.509
Hoch_6462
PFAM: OmpA/MotB domain protein; KEGG: mxa:MXAN_5598 OmpA domain-containing protein.
  
     0.470
Hoch_2927
PFAM: Low density lipoprotein-receptor, class A, cysteine-rich; SMART: Low density lipoprotein-receptor, class A, cysteine-rich; KEGG: hypothetical protein.
  
     0.462
Your Current Organism:
Haliangium ochraceum
NCBI taxonomy Id: 502025
Other names: H. ochraceum DSM 14365, Haliangium ochraceum DSM 14365, Haliangium ochraceum SMP-2, Haliangium ochraceum str. DSM 14365, Haliangium ochraceum strain DSM 14365, myxobacterium SMP-2
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.