STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Hoch_1782KEGG: scl:sce1431 hypothetical protein. (253 aa)    
Predicted Functional Partners:
Hoch_1783
Hypothetical protein; KEGG: rlg:Rleg_5461 AAA ATPase.
     
 0.805
Hoch_2863
PFAM: 5-methylcytosine restriction system component- like protein; KEGG: scl:sce8202 hypothetical protein.
 
     0.502
Hoch_1417
PFAM: Serine/threonine protein kinase-related; tyrosine protein kinase; aminoglycoside phosphotransferase; WD40 repeat, subgroup; SMART: serine/threonine protein kinase; tyrosine protein kinase; WD-40 repeat protein; KEGG: scl:sce4552 protein kinase.
 
    0.433
Hoch_1433
PFAM: Serine/threonine protein kinase-related; tyrosine protein kinase; WD40 repeat, subgroup; SMART: serine/threonine protein kinase; tyrosine protein kinase; WD-40 repeat protein; KEGG: scl:sce4552 protein kinase.
 
    0.410
Hoch_1432
PFAM: Serine/threonine protein kinase-related; tyrosine protein kinase; WD40 repeat, subgroup; SMART: serine/threonine protein kinase; tyrosine protein kinase; WD-40 repeat protein; KEGG: scl:sce4552 protein kinase.
 
    0.408
Hoch_1435
PFAM: Serine/threonine protein kinase-related; tyrosine protein kinase; WD40 repeat, subgroup; SMART: serine/threonine protein kinase; tyrosine protein kinase; WD-40 repeat protein; KEGG: scl:sce4552 protein kinase.
 
    0.408
Hoch_3296
PFAM: Serine/threonine protein kinase-related; tyrosine protein kinase; WD40 repeat, subgroup; SMART: serine/threonine protein kinase; tyrosine protein kinase; WD-40 repeat protein; KEGG: scl:sce4551 protein kinase.
 
    0.406
Hoch_2864
PFAM: ATPase associated with various cellular activities AAA_5; SMART: AAA ATPase; KEGG: scl:sce8203 putative 5-methylcytosine- specific restriction enzyme B.
 
     0.400
Your Current Organism:
Haliangium ochraceum
NCBI taxonomy Id: 502025
Other names: H. ochraceum DSM 14365, Haliangium ochraceum DSM 14365, Haliangium ochraceum SMP-2, Haliangium ochraceum str. DSM 14365, Haliangium ochraceum strain DSM 14365, myxobacterium SMP-2
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.